Detail information of EPlOSAG00000028235_circ_ig.7


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.7
ID in PlantcircBase osa_circ_009986
Alias NA
Organism Oryza sativa
Position chr11: 26556960-26557220  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.1 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.3 EPlOSAG00000028235_circ_ig.4 EPlOSAG00000028235_circ_ig.5 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.8 EPlOSAG00000028235_circ_ig.9 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.11 EPlOSAG00000028235_circ_ig.12
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAAATGAAAAAAAAAAGACAAGCTATGCAATGCCACATTGCCATAAACAAGCCCTCATAGAA
CAAATTTGCATAATCTCTGAGATATAATATATGTACaggatacattttatagtgtacttaacaa
gcgataaatgataaggattaaaaattaaaacaaagattgcatgcaaacgaacacccaagtgtca
aagagaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGATACATTTTATAGTGTACTTAACAAGCGATAAATGATAAGGATTAAAAATTAAAACAAAGA
TTGCATGCAAACGAACACCCAAGTGTCAAAGAGACAGAACCAACCAATTAGAACTGAATACCCA
ATGCCACCAAAGTTAGTTTTCACAACAGTTCAAATCAAATGAAAAAAAAAAGACAAGCTATGCA
ATGCCACATTGCCATAAACAAGCCCTCATAGAACAAATTTGCATAATCTCTGAGATATAATATA
TGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.273604278
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017