Detail information of EPlOSAG00000028235_circ_ig.5


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.5
ID in PlantcircBase osa_circ_009984
Alias NA
Organism Oryza sativa
Position chr11: 26556476-26556932  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.1 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.3 EPlOSAG00000028235_circ_ig.4 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.7 EPlOSAG00000028235_circ_ig.8 EPlOSAG00000028235_circ_ig.9 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.11 EPlOSAG00000028235_circ_ig.12
Support reads 2
Tissues root, seed
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTGTGACCAATAAGAATGAAAATTGTTACCGGGAAAAGGTCAAATAGCGTCTGGCTGCTACT
AGCAAACTTTGTAAAAAGAAATCCACCTGGGTGGGCcgtgcgaatgctaccaacattggattta
gctttaagggtttcaacgtcacgatccagttgttgcttccaatctgtgagtaatgtttcatcct
gcaaattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTGCGAATGCTACCAACATTGGATTTAGCTTTAAGGGTTTCAACGTCACGATCCAGTTGTTGC
TTCCAATCTGTGAGTAATGTTTCATCCTGCAAATTCAGTTGCTTGGATTAGATAATATACTTGA
GCATAATACTTGAACAAGATAACAAGGGATATTAGCACCTGTGGAAGTTGGATCGAAATTTTGT
TAGGGAAAAGTTTATTTAGATGTTTCATTGCCTTCGGACTTTCTTTGTTCCTTTCATGCAACCG
ACTACCAAAACTATCCTGCATTTTAGATATAACAATGCATCAGATAGTTATATCAGAACCATGG
GTTCATATAGTGCATTTATAAGCACTGATAGAAAGAACATTGTGACCAATAAGAATGAAAATTG
TTACCGGGAAAAGGTCAAATAGCGTCTGGCTGCTACTAGCAAACTTTGTAAAAAGAAATCCACC
TGGGTGGGC
Conservation Information
Conserved circRNAs osi_circ_009202
PMCS 0.161210832
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017