Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA033586_circ_g.3 |
ID in PlantcircBase | osi_circ_003221 |
Alias | 11:21502615|21503799 |
Organism | Oryza sativa ssp. indica |
Position | chr11: 21502615-21503799 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA033586 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA033586_circ_g.4 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA033586-TA:2 |
Conservation Information | |
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Conserved circRNAs | osa_circ_009990* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21503765-21503779(-) 21502711-21503783(-) 21503785-21503110(+) 21503789-21502671(+) |
Potential amino acid sequence |
MVPPSPVTLLEPPVAGVKRLRMENRTGDTSAVAGTELLASVSDQLKDLSAAPPASAGENNQRLV RPMASSASDKSKGNGIIPDKECENGENANEVNSNVEDSPLDVAAAPVVSPDAVPNDISQHNGFG SDAHLGAEIGKIATYKIRPVLRMIAGTTISEFDLTGDLFKALEDQRDLIRHLNSSASLPPSRCQ AFKDGMKQGIISPNDIDVTFENFPYYLSDNTKNVLLSCAFIHLEKKEFIKQFSEISSINQRILL SGPADFSASIE*(-) MCIHTLGKEGIHQTILRNFINKPTDSIIWSSRFFSIH*(-) MDAEKSAGPDNRIRWFIDEISENCLMNSFFSKCMNAHDKSTFFVLSLR*(+) MLKNLLDQIIESVGLLMKFLRIV*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |