Detail information of BGIOSGA033586_circ_g.3


General Information
CircRNA Name BGIOSGA033586_circ_g.3
ID in PlantcircBase osi_circ_003221
Alias 11:21502615|21503799
Organism Oryza sativa ssp. indica
Position chr11: 21502615-21503799  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033586
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033586_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA033586-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCGGAGACGCTTGACACCAGCAACTGGAGGTTCTAAAAGGGTGACAGGAGATGGCGGCACCAT
TTTAGGAATTTTGTCATTCAATGGATGCTGAAAAATctgctggaccagataatagaatccgttg
gtttattgatgaaatttctgagaattgtttgatgaattccttcttttccaagtgtatgaatgca
catgataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTGGACCAGATAATAGAATCCGTTGGTTTATTGATGAAATTTCTGAGAATTGTTTGATGAA
TTCCTTCTTTTCCAAGTGTATGAATGCACATGATAAGAGCACATTCTTTGTGTTATCGCTGCAT
GAAATGGAGTTGATGAACAACACATGAATACAAGAACACAAACATGTGAGAGAACAGATATCAT
GCTACAATTAAAGTTACGTCAGTGGAAGTCTGTAAGAATATGAACATGTGAGAGAGCAATGAAT
ATCATGCTACATTTAAACTACTTTATCAACCGTGTTGTGCCTATTATCTAATGAATGCTATATT
GGTATGAACTAATCATACAGAATATAGCGAATTAAGAATAACTAATGAATGCTATTTTAGTTTT
TTTTTTAACAATGTAACATCGCAGATATGAAGCATATTAAGAACACAAAATAAACAGAATAAAA
GTTAAAGAATATAGGAAGGAAGATTAACCCAAAGTATATTACCTGAGGTAATAAGGAAAATTTT
CAAATGTAACATCAATATCATTTGGACTAATAATTCCTTGTTTCATCCCATCCTTAAAGGCTTG
GCATCTGCTTGGAGGTAAACTGGCTGAAGAGTTAAGATGCCTGATGAGATCCCTCTGATCTTCA
AGAGCTTTAAAAAGATCACCAGTCAAATCGAACTCTGATATAGTTGTTCCTGCAATCATCCTCA
GAACTGGCCTTATCTTATAAGTTGCAATCTTACCGATTTCAGCACCAAGATGAGCATCAGATCC
AAAGCCATTGTGTTGACTGATGTCGTTCGGGACAGCATCAGGAGATACTACGGGGGCTGCAGCC
ACATCTAATGGAGAATCTTCAACATTAGAATTAACTTCATTAGCATTTTCCCCGTTCTCACATT
CCTTGTCAGGGATGATGCCATTTCCTTTTGATTTATCAGAAGCGGATGATGCCATAGGTCGTAC
TAATCTCTGATTGTTCTCTCCAGCTGATGCAGGTGGTGCAGCTGATAGGTCCTTCAACTGATCA
GATACGGATGCTAATAGCTCTGTCCCTGCAACAGCTGAAGTGTCTCCTGTTCTGTTCTCCATCC
GGAGACGCTTGACACCAGCAACTGGAGGTTCTAAAAGGGTGACAGGAGATGGCGGCACCATTTT
AGGAATTTTGTCATTCAATGGATGCTGAAAAAT
Conservation Information
Conserved circRNAs osa_circ_009990*
PMCS
Functional Information
Coding potential Y
Potential coding position 21503765-21503779(-)
21502711-21503783(-)
21503785-21503110(+)
21503789-21502671(+)
Potential amino acid sequence MVPPSPVTLLEPPVAGVKRLRMENRTGDTSAVAGTELLASVSDQLKDLSAAPPASAGENNQRLV
RPMASSASDKSKGNGIIPDKECENGENANEVNSNVEDSPLDVAAAPVVSPDAVPNDISQHNGFG
SDAHLGAEIGKIATYKIRPVLRMIAGTTISEFDLTGDLFKALEDQRDLIRHLNSSASLPPSRCQ
AFKDGMKQGIISPNDIDVTFENFPYYLSDNTKNVLLSCAFIHLEKKEFIKQFSEISSINQRILL
SGPADFSASIE*(-)
MCIHTLGKEGIHQTILRNFINKPTDSIIWSSRFFSIH*(-)
MDAEKSAGPDNRIRWFIDEISENCLMNSFFSKCMNAHDKSTFFVLSLR*(+)
MLKNLLDQIIESVGLLMKFLRIV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021