Detail information of Os04g0566500_circ_g.5


General Information
CircRNA Name Os04g0566500_circ_g.5
ID in PlantcircBase osa_circ_024916
Alias NA
Organism Oryza sativa
Position chr4: 28431188-28432004  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.3 Os04g0566500_circ_g.4 Os04g0566500_circ_g.6 Os04g0566500_circ_g.7 Os04g0566500_circ_g.8 Os04g0566500_circ_g.9 Os04g0566500_circ_g.10 Os04g0566500_circ_g.11 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-03:4
Os04t0566500-01:4
Os04t0566500-04:4
Os04t0566500-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGCTTTGGTAAAAACCACGCCAACTTTCCAAACCCTCACCAAGTTGCTGGCGTCTCCCTAAA
TTGGGAGAATAAAATGACCGACCAACTGGTGAGTACctccataggcagataattgggcctttgc
tgattgcccacttgaaggcaaggcaaagtggtgtgctgaatactaaaaccatatgtctccagaa
aatattgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCATAGGCAGATAATTGGGCCTTTGCTGATTGCCCACTTGAAGGCAAGGCAAAGTGGTGTGC
TGAATACTAAAACCATATGTCTCCAGAAAATATTGCACCACAGTCTTCACAGTACCACGATCAT
CGACAGGGAATCTATCACAGGAGAACGGACCAAATCATATCAGTGCACAATCCTTTCAAATACC
CATCTGCAGGAGTGCAATAGATTCTCATATAAGCTAGGGAAGAAGTGCATACGATAACTCCCTT
GTTGCCTGTGAAGTGAGTCCAGATATACGATATTTTCTACGCATGTTTCCTCTATGCGTCACCT
CAACCTTCACACCTCTTAGAGCTTTCTTTATCTGTGAGAAAAAGGACAATGACGGTTAAAAAAA
ACATTTTCTTAAGCACATACGGAGGTATTGTCAACAAAGGTGGTGAGGTAATATAACCAAACCT
TCACACGATCAGAATCAGATAATGGTCTAACTGAGATGTCTCTGTTCAGAAGCTGAGCAACAAA
GTCAATCACAGGTAGAGGCTCAATAAATGCAGTTGATGACATATCTGAAACAACAAATAAGCAA
TTTCAGTACGCCAGATGACACCAATGGTGAATCTGATTATACCAAAAAAATGTTTTTTGCATCT
AGATACACAATGACAAATCAGGAGAAGTGCAACAGTATCTAACCAATATTCAGTGAGAGACCCA
TCTGGGTAGGCCTTATGCTTTGGTAAAAACCACGCCAACTTTCCAAACCCTCACCAAGTTGCTG
GCGTCTCCCTAAATTGGGAGAATAAAATGACCGACCAACTGGTGAGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.207803356
Functional Information
Coding potential Y
Potential coding position 28431894-28431944(-)
28431269-28431944(-)
Potential amino acid sequence MGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRR
KYRISGLTSQATRELSFPVDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVL
TSWSVILFSQFRETPATW*(-)
MVLVFSTPLCLAFKWAISKGPIICLWRYSPVGRSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQ
MGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRR
KYRISGLTSQATRELSFPVDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVL
TSWSVILFSQFRETPATW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017