Detail information of Os08g0318500_circ_g.15


General Information
CircRNA Name Os08g0318500_circ_g.15
ID in PlantcircBase osa_circ_036685
Alias Os_ciR5594
Organism Oryza sativa
Position chr8: 13751887-13756138  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os08g0318500
Parent gene annotation Sec8 exocyst complex component specific domain containing protei
n. (Os08t0318500-01)
Parent gene strand -
Alternative splicing Os08g0318500_circ_g.1 Os08g0318500_circ_g.2 Os08g0318500_circ_g.3 Os08g0318500_circ_g.4 Os08g0318500_circ_g.5 Os08g0318500_circ_g.6 Os08g0318500_circ_g.7 Os08g0318500_circ_g.8 Os08g0318500_circ_g.9 Os08g0318500_circ_g.10 Os08g0318500_circ_g.11 Os08g0318500_circ_g.12 Os08g0318500_circ_g.13 Os08g0318500_circ_g.14 Os08g0318500_circ_g.16 Os08g0318500_circ_g.17
Support reads 3/4
Tissues root/root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os08t0318500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACAGGCCATGCTAAGCTGTTCAGTGTGTACCTTCGTTTGGCGCAGTGATTGCTGCATCCGTA
ATGCGAAAAGCAAAAGAAAGGCCTTCTGATCCATCCtagatatagcctgttgaacacattttcg
gtaatctacaaatattgctggcaagaagtgctccttcaagaagttgttcacaaaagccaatagc
ccatcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAGATATAGCCTGTTGAACACATTTTCGGTAATCTACAAATATTGCTGGCAAGAAGTGCTCCTT
CAAGAAGTTGTTCACAAAAGCCAATAGCCCATCATTCCTACAGAAATTTAAGAGCGATAATGAA
TCAAATTCATCAAAGTTCTCACATTTCAAAGTTGGAAATTGCAAATATTCCGTACAAGTGCTTT
CTTTTAAACAAGGATTGAGCTTTAGAAAAAGAACCAAACAGCTCTTACCATTTTTTTTTTTGTC
TTTAACTTGTCATTTTATCACAAAATGCAAGGAAGGTTTTTAGTCCTTTTTGTTTATGGTAATA
GCAGAATTTCCATGACAAACCAGATACTTGTTTGTAGACTAGTGGGCAAGTTTTATTCTTTTTA
CTGCACACATTCTGAAATGACATCTACTTGAGAGAACATAATAGGAAGTAGATGCGAACAGAGA
CAACCATATATCCCAGAAATTTGAGAAAAGCTTTCTGGTCATCTAGATCATCCAGGTGTTATCA
TTTGTATGCATAAAATGAAAGAAGTAATTTCAGTTACCCCCTCTGTTCGAAAATATAAGCATTT
CTGGGGCTATGTACCTGGATGGAGGGATGTAGAAATGCTTGTATTTTGGAATGGAGGGAGTAGT
TATTGAGTTATTTATGCAAGCAGTAAAACAGAAGTATTTTTGCAACATAAAGTTCAGACAAAAT
AGTACCTCCTTCCATATAAATAACTACAGGTTCCTTTTTTGAGGAGAAAGAGTCGGTTGCGGAG
AAATTTGTCTTATGTAAGGAAATTTTTTCTTGGGTGAAGAAAAACATTATTTCCCAGTGTTGTT
TTGGAAAAGCTGTATGGTATATTGACAATTGCGCACAGTGCACTACAGGAATGTCCTTGGAGAA
ATTCCAGGTAATTGTATGAACAGAAACTACATCCGTCCTTAAATGCTGAAGTTTCTGCATTAAT
AATATGAACCCAATCTTTCTACTATATAAACAGGTACATGTGAACAAACATCATGCTGAGAAGC
TGTTTTGCATGTTTACAATTGCTGCAGACAGGGAACAGGAAGTTATAGGAAGGGAAAATGACTA
TAAATCAAAAAAGGCTTAAGGTTATCTGCAAAAGAAATTCTAGGCATTTATAGCAAGTTATAGG
CTTCTTTTTAGATGATTTTTGTTTTCCGTACACTAGGTCAATATGCAGGGGAAAAGTTGATTAA
AATTAGACATAGAGATGAATATTAAGATTACTACAACAGAACTTAGAAAATAATTCACTTGGCA
GCATAATCTAGTGACAGGTTTAAAATCGAAGCTCAAGATCCTCCAAAAACAACACCCTTTATTT
CTCTCTCCCTTCTCATGTGTAATAACTCTATTGTGTATCTTGAAATAAACGTACTTGAGGTGCT
CTAACATATAACAAGTGACTGGCACACAAACCCACAATGAAGTGTTTGGAACTCTGTAGTCTAT
ACAGAAACGTGTGCATGTGCTACCAATTTTCGATACGTAGGGGGGGACATAACGGAAAAAATGT
GGTGTACTTAAAGTCTTAAAGTTACACAGCATATCATACAACTTCTATAGTTCACTAGGATATT
AGAAGAAATCTTTGCATGGAAGAAGAAATTGTAGATTCACAGTCTCCACTGTGAACAAGAATAG
AAGTTAGAGATTTGAGGCATTACCCAAGTTGCCAATATTTCTGCGGAAGCATCAGTCCAATTTT
ATTCATAAACTGCAGAAAGTACATAGATATCTCCATGAATAACTTGGTAAATATGCTGTGGTAT
GCGTGTGCAACAGACAACCATGAGACAGGTCACCTCAAATACAGGACGGTAAACTGATGCTGCA
AGGAAAATCCCTTGGTCAGGTATGACACTTGCTGTTCCATAGCCTTCTTGTGGTACTGTTGAGT
TTCTTCGCCATCCTTGACCTGCAACTTTGATCACTAAACATTAGAATCAAGTATTTATGCCATT
TACTTAAAATGTACTCCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGTACGTGTTTG
TCCATTCGTCTTATTCAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATTG
TTAAATATACTTTCATGTACACATATAGTTTTACATATTTCACTTTTTTTTTAATAAGACGAAC
GGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGAGGGAGTAAAAGCAAA
GTTAATGGTGTAATCTTTTATGCTTGGTCCTATCTGTACTACTCGTGTGTTTGCTAATAGAGAG
CCAAGCAATCTGATTCTCCATCACCATGGCCTTAGACCCGCTCTCCCCCATGTTATTTATTTTG
GTCATGGATGTCTTGAACTCAGTGGTCATGCTTCTCTTGAAGGTTGGTTGCAGTCCCTATCTAT
TCAGCATGCTCAACATAGATGCTCTTTTTAGGCTGACAATGTGGTTATGTTCCTAAGGCCAACA
GTGAATAACATCACTATCATCAAGCAACTGTTGGATGTGTTCGGTCATGCATCTGGGCTAGTGA
CTAATTTGCAAAAGAGCTCAGTCACTCCTATCCAGTGCAAAGAAGAAGATCTAGAAATAATTTC
CAACCTTCTCTCTTGTGGAGTAAAAGAGTTTCCCTGCACCTACCTGGGGTTGTCTCTCAATATT
AAGAAATCTAGCAAAGCTAAACTGCAATTCTTGGTGGATAAGGTGGCTGACAACCTTCCTACAT
GGAAGGCTTCCCTCATGAACAGAGCTGGGAGACTCACCACGGTGAACTGAAAGTAGTTCTATCA
GCCATCCCAATTTATTTGATGATTGCAATGGATATCCCTAAATGGGTGATTAAGGCAATAGGTA
AAAGGTGAAGAGGTTTCCTATGGGTCAAGCACAAAAGGGCTAATGGTGGTAATTGTTTGGTTGC
ATGGGAGCAGGTTTGTCGACCCCCTATGTACGGTGGTTTGGGGATTCACAACTTGGAGCTCATG
AATTGGGTCCTTCGCATTCGGTGGCTTTGGTTGCAAAAGACTGATGGTGCTCGGGCTTGGCAAG
GATTGGACCTTCAAGTTCCAAGCAATGCTCATGTCATGTTCAATATGGCCATGGAAACAATGGT
TGGGAATGGTCAATCCATCTTGTTCTGGTCAGAAAGATGGATACAGGGCAGGACTGCAGAGGTG
GCCGCTAATCTTATCAATTTAGTCCAGAAAAAGGATATTAAAAACCATATTGTGGCACAGGCTT
TGGAAAACCATAGATGGACTACAGAAATCAGAGGAGCCCTCCCTGTCCAAGTCATCGTGGAGTA
TCTTCACTTGTGGGACTTGGTGGCTGAAGTGGAATTACAGGATGGCATCTCTGACCAGTACCAC
TGGAAGCTGGACAAGACTGGTGAGTATACTTGCAAGTCAGCCTACAAGTGCTTATTTGTTGGTA
CAGTTAGAATTGCACCTTGGAGAAAGATTTGGAAGAATTGGGCGCCATTGAGATGCAAGTTATT
TCCTTGGCTTGTGTTTAACAAACGATGTCGGCCAGCAGACCAGCTTGCCAGTAGAGGGCTGTCA
CACCCCTCTGCCTGCCCTCTTTGTGATCAGACAGAAGAAACCATCCACCACCTTCTTTCTCTTG
ACAAGTTTGGTATATAATCCTCCAAAAGATGGGCTGGCCCATATACCCCAGGTCCAGATACAGC
TAACTTATCAAGGTGGTGGTCAAGGATGCTGAGAGGAAGACAAAGACACCAAGAAAGAACTTAG
CTCTCTCATCATTCTGGTGCTGTGGGAGATTTGGAAGCATAAGAATGATTGTGTTTTTAACGGT
GCTAATTCTTGTGTAGCTACTGTCCTCCAAACAGTGGAAAATGAGTGTATCATGTGGTCGCTAG
CCAGGGCTTCTAGGCTAAAGGAGTTAATTGAAAGGTCAGTAGCCCCTTGGAGGTGAGGTTTTTT
TGCGTGCGTTGTAAAGGCTTCGGCTTGTTTTGGATCAGGTTGGTAGGCGCTGATCCTTTCCCAT
TCCTTTTTTCCTTCTCTTAATGAAATGATACGTAATTCTCTTGTGTATTCAAAAAAAAAAGTTA
ATGCAAAATATTTAAAGGCAGGACATGTAACATGAAAAAGAAAAGGATTCGAGTCCATACAGGC
CATGCTAAGCTGTTCAGTGTGTACCTTCGTTTGGCGCAGTGATTGCTGCATCCGTAATGCGAAA
AGCAAAAGAAAGGCCTTCTGATCCATCC
Conservation Information
Conserved circRNAs osi_circ_007665* osi_circ_017768
PMCS 0.198870806
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017