Detail information of BGIOSGA027201_circ_g.13


General Information
CircRNA Name BGIOSGA027201_circ_g.13
ID in PlantcircBase osi_circ_007665
Alias 8:14879373|14883625
Organism Oryza sativa ssp. indica
Position chr8: 14879373-14883625  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA027201
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA027201_circ_g.1 BGIOSGA027201_circ_g.2 BGIOSGA027201_circ_g.3 BGIOSGA027201_circ_g.4 BGIOSGA027201_circ_g.5 BGIOSGA027201_circ_g.6 BGIOSGA027201_circ_g.7 BGIOSGA027201_circ_g.8 BGIOSGA027201_circ_g.9 BGIOSGA027201_circ_g.10 BGIOSGA027201_circ_g.11 BGIOSGA027201_circ_g.12 BGIOSGA027201_circ_g.14 BGIOSGA027201_circ_g.15 BGIOSGA027201_circ_g.16 BGIOSGA027201_circ_g.17 BGIOSGA027201_circ_g.18 BGIOSGA027201_circ_g.19 BGIOSGA027201_circ_g.20 BGIOSGA027201_circ_g.21
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA027201-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACAGGCCATGCTAAGCTGTTCAGTGTGTACCTTCGTTTGGCGCAGTGATTGCTGCATCCGTA
ATGCGAAAAGCAAAAGAAAGGCCTTCTGATCCATCCtagatatagcctgttgaacacattttcg
gtaatctacaaatattgctggcaagaagtgctccttcaagaagttgttcacaaaagccaatagc
ccatcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAGATATAGCCTGTTGAACACATTTTCGGTAATCTACAAATATTGCTGGCAAGAAGTGCTCCTT
CAAGAAGTTGTTCACAAAAGCCAATAGCCCATCATTCCTACAGAAATTTAAGAGCGATAATGAA
TCAAATTCATCAAAGTTCTCACATTTCAAAGTTGGAAATTGCAAATATTCCGTACAAGTGCTTT
CTTTTAAACAAGGATTGAGCTTTAGAAAAAGAACCAAACAGCTCTTACCATTTTTTTTTTGTCT
TTAACTTGTCATTTTATCACAAAATGCAAGGAAGGTTTTTAGTCCTTTTTGTTTATGGTAATAG
CAGAATTTCCATGACAAACCAGATACTTGTTTGTAGACTAGTGGGCAAGTTTTATTCTTTTTAC
TGCACACATTCTGAAATGACATCTACTTGAGAGAACATAATAGGAAGTAGATGCGAACAGAGAC
AACCATATATCCCAGAAATTTGAGAAAAGCTTTCTGGTCATCTAGATCATCCAGGTGTTATCAT
TTGTATGCATAAAATGAAAGAAGTAATTTCAGTTACCCCCTCTGTTCGAAAATATAAGCATTTC
TGGGGCTATGTACCTGGATGGAGGGATGTAGAAATGCTTGTATTTTGGAATGGAGGGAGTAGTT
ATTGAGTTATTTATGCAAGCAGTAAAACAGAAGTATTTTTGCAACATAAAGTTCAGACAAAATA
GTACCTCCTTCCATATAAATAACTACAGGTTCCTTTTTTGAGGAGAAAGAGTCGGTTGCGGAGA
AATTTGTCTTATGTAAGGAAATTTTTTCTTGGGTGAAGAAAAACATTATTTCCCAGTGTTGTTT
TGGAAAAGCTGTATGGTATATTGACAATTGCGCACAGTGCACTACAGGAATGTCCCTTGGAGAA
ATTCCAGGTAATTGTATGAACAGAAACTACATCCGTCCTTAAATGCTGAAGTTTCTGCATTAAT
AATATGAACCCAATCTTTCTACTATATAAACAGGTATATGTGAACAAACATCATGCTGAGAAGC
TGTTTTGCATGTTTACAATTGCTGCAGACAGGGAACAGGAAGTTATAGGAAGGGAAAATGACTA
TAAATCAAAAAAGGCTTAAGGTTATCTGCAAAAGAAATTCTAGGCATTTATAGCAAGTTATAGG
CTTCTTTTTAGATGATTTTTGTTTTCCGTACACTAGGTCAATATGCAGGGGAAAAGTTGATTAA
AATTAGACATAGAGATGAATATTAAGATTACTACAACAGAACTTAGAAAATAATTCACTTGGCA
GCATAATCTAGTGACAGGTTTAAAATCGAAGCTCAAGATCCTCCAAAAACAACACCCTTTATTT
CTCTCTCCCTTCTCATGTGTAATAACTCTATTGTGTATCTTGAAATAAACGTACTTGAGGTGCT
CTAACATATAACAAGTGACTGGCACACAAACCCACAATGAAGTGTTTGGAACTCTGTAGTCTAT
ACAGAAACGTGTGCATGTGCTACCAATTTTCGATACGTAGGGGGGGACATAACGGAAAAAATGT
GGTGTACTTAAAGTCTTAAAGTTACACAGCATATCATACAACTTCTATAGTTCACTAGGATATT
AGAAGAAATCTTTGCATGGAAGAAGAAATTGTAGATTCACAGTCTCCACTGTGAACAAGAATAG
AAGTTAGAGATTTGAGGCATTACCCAAGTTGCCAATATTTCTGCGGAAGCATCAGTCCAATTTT
ATTCATAAACTGCAGAAAGTACATAGATATCTCCATGAATAACTTGGTAAATATGCTGTGGTAT
GCGTGTGCAACAGACAACCATGAGACAGGTCACCTCAAATACAGGACGGTAAACTGATGCTGCA
AGGAAAATCCCTTGGTCAGGTATGACACTTGCTGTTCCATAGCCTTCTTGTGGTACTGTTGAGT
TTCTTCGCCATCCTTGACCTGCAACTTTGATCACTAAACATTAGAATCAAGTATTTATGCCATT
TACTTAAAATGTACTCCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGTACGTGTTTG
TCCATTCGTCTTATTCAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATTG
TTAAATATACTTTCATGTACACATATAGTTTTACATATTTCACTTTTTTTTTAATAAGACGAAC
GGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGAGGGAGTAAAAGCAAA
GTTAATGGTGTAATCTTTTATGCTTGGTCCTATCTGTACTACTCGTGTGTTTGCTAATAGAGAG
CCAAGCAATCTGATTCTCCATCACCATGGCCTTAGACCCGCTCTCCCCCATGTTATTTATTTTG
GTCATGGATGTCTTGAACTCAGTGGTCATGCTTCTCTTGAAGGTTGGTTGCAGTCCCTATCTAT
TCAGCATGCTCAACATAGATGCTCTTTTTAGGCTGACAATGTGGTTATGTTCCTAAGGCCAACA
GTGAATGACATCACTATCATCAAGCAACTGTTGGATGTGTTCGGTCATGCTTCTGGGCTAGTGA
CTAATTTGCAAAAGAGCTCAGTCACTCCTATCCAGTGCAAAGAAGAAGATCTAGAAATAATTTC
CAACCTTCCCTCTTGTGGAGTAAAAGAGTTTCCCTGCACCTACCTGGGGTTGTCTCTCAATATT
AAGAAATCTAGCAAAGCTAAACTGCAATTCTTGGTGGATAAGGTGGCTGACAACCTTCCTACAT
GGAAGGCTTCCCTCATGAACAGAGCTGGGAGACTCACCACGGTGAACTGAAAGTAGTTCTATCA
GCCATCCCAATTTATTTGATGATTGCAATGGATATCCCTAAATGGGTGATTAAGGCAATAGGTA
AAAGGTGAAGAGGTTTCCTATGGGTCAAGCACAAAAGGGCTAATGGTGGTAATTGTTTGGTTGC
ATGGGAGCAGGTTTGTCGACCCCCTATGTACGGTGGTTTGGGGATTCACAACTTGGAGCTCATG
AATTGGGTCCTTCGCATTCGGTGGCTTTGGTTGCAAAAGACTGATGGTGCTCGGGCTTGGCAAG
GATTGGACCTTCAAGTTCCAAGCAATGCTCATGTCATGTTCAATATGGCCATGGAAACAATGGT
TGGGAATGGTCAATCCATCTTGTTCTGGTCAGAAAGATGGATACAGGGCAGGACTGCAGAGGTG
GCCGCTAATCTTATCAATTTGGTCCAGAAAAAGGATATTAAAAACCATATTGTGGCACAGGCTT
TGGAAAACCATAGATGGACTACAGAAATCAGAGGAGCCCTCCCTGTCCAAGTCATCGTGGAGTA
TCTTCACTTGTGGGACTTGGTGGCTGAAGTGGAATTACAGGATGGCATCTCTGACCAGTACCAC
TGGAAGCTGGACAAGACTGGTGAGTATACTTGCAAGTCAGCCTACAAGTGCTTATTTGTTGGTA
CAGTTAGAATTGCACCTTGGAGAAAGATTTGGAAGAATTGGGCGCCATTGAGATGCAAGTTATT
TCCTTGGCTTGTGTTTAACAAACGATGTCGGCCAGCAGACCAGCTTGCCAGTAGAGGGCTGTCA
CACCCCTCTGCCTGCCCTCTTTGTGATCAGACAGAAGAAACCATCCACCACCTTCTTTCTCTTG
ACAAGTTTGGTATATAATCCTCCAAAAGATGGGCTGGCCCATATACCCCAGGTCCAGATACAGC
TAACTTATCAAGGTGGTGGTCAAGGATGCTGAGAGGAAGACAAAGACACCAAGAAAGAACTTAG
CTCTCTCATCATTCTGGTGCTGTGGGAGATTTGGAAGCATAAGAATGATTGTGTTTTTAACGGT
GCTAATTCTTGTGTAGCTACTGTCCTCCAAACAGTGGAAAATGAGTGTATCATGTGGTCGCTAG
CCAGGGCTTCTAGGCTAAAGGAGTTAATTGAAAGGTCAGTAGCCCCTTGGAGGTGAGGTTTTTT
TGCGTGCGTTGTAAAGGCTTCGGCTTGTTTTGGATCAGGTTGGTAGGCGCTGATCCTTTCCCAT
TCCTTTTTTCCTTCTCTTAATGAAATGATACGTAATTCTCTTGTGTATTCAAAAAAAAAAAGTT
AATGCAAAATATTTAAAGGCAGGACATGTAACATGAAAAAGAAAAGGATTCGAGTCCATACAGG
CCATGCTAAGCTGTTCAGTGTGTACCTTCGTTTGGCGCAGTGATTGCTGCATCCGTAATGCGAA
AAGCAAAAGAAAGGCCTTCTGATCCATCC
Conservation Information
Conserved circRNAs osa_circ_036685*
PMCS
Functional Information
Coding potential Y
Potential coding position 14881108-14881105(-)
Potential amino acid sequence MNKIGLMLPQKYWQLGNDGLLAFVNNFLKEHFLPAIFVDYRKCVQQAISRMDQKAFLLLFALRM
QQSLRQTKVKDGEETQQYHKKAMEQQVSYLTKGFSLQHQFTVLYLSL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021