Plant Circular RNA Database

Detail information of Os08g0318500_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os08g0318500_circ_g.7
					
						ID in PlantcircBase
						osa_circ_036677
					
						Alias
						Os_ciR5593
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 13743687-13747610  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os08g0318500						
					
						Parent gene annotation
						
							Sec8 exocyst complex component specific domain containing protei
n. (Os08t0318500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0318500_circ_g.1 Os08g0318500_circ_g.2 Os08g0318500_circ_g.3 Os08g0318500_circ_g.4 Os08g0318500_circ_g.5 Os08g0318500_circ_g.6 Os08g0318500_circ_g.8 Os08g0318500_circ_g.9 Os08g0318500_circ_g.10 Os08g0318500_circ_g.11 Os08g0318500_circ_g.12 Os08g0318500_circ_g.13 Os08g0318500_circ_g.14 Os08g0318500_circ_g.15 Os08g0318500_circ_g.16 Os08g0318500_circ_g.17 						
					
						Support reads
						3/1
					
						Tissues
						root/shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0318500-01:4

General Information
CircRNA Name	Os08g0318500_circ_g.7
ID in PlantcircBase	osa_circ_036677
Alias	Os_ciR5593
Organism	Oryza sativa
Position	chr8: 13743687-13747610 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os08g0318500
Parent gene annotation	Sec8 exocyst complex component specific domain containing protei n. (Os08t0318500-01)
Parent gene strand	-
Alternative splicing	Os08g0318500_circ_g.1 Os08g0318500_circ_g.2 Os08g0318500_circ_g.3 Os08g0318500_circ_g.4 Os08g0318500_circ_g.5 Os08g0318500_circ_g.6 Os08g0318500_circ_g.8 Os08g0318500_circ_g.9 Os08g0318500_circ_g.10 Os08g0318500_circ_g.11 Os08g0318500_circ_g.12 Os08g0318500_circ_g.13 Os08g0318500_circ_g.14 Os08g0318500_circ_g.15 Os08g0318500_circ_g.16 Os08g0318500_circ_g.17
Support reads	3/1
Tissues	root/shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0318500-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATATCGACAGCCAAAAGCCCTTGTAGTACAGGACGCCCATTTTCGACTAATGGACTATACACTG
AGGTTGCATGGACACGCGGTCTAAATGCGGCTGGACctttcaactgaatccgctaaatattcca
atgaatcactaagagatgctaacagtatcaatttctggtcatcatggatcaagttttcctgcat
atccagag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTCAACTGAATCCGCTAAATATTCCAATGAATCACTAAGAGATGCTAACAGTATCAATTTCT
GGTCATCATGGATCAAGTTTTCCTGCATATCCAGAGAAAAGGTTTCATTCAACAAATAGGAGAA
AAAAATTGTAAAACCAGAATTGTTCTGACGCCAATTGAACAAAACTAGCACGAGAAACAGGTTT
TCCATCCTTTTCTGGCAGATGGACATGTATCTCAATTCGGACATAACATATCAGCCAAAAGCTT
GCAACGTATACACATGATAAGGTCACACCAGAACTGTGATGTAGAAACAGCTGATCACATGGCA
TACATGTAAACTCTGAAATCATTGGAGTTATGTCCCTCGACTCTTAAAGCTGTTTGTTTTTCAT
CCTTCTGACAGTTTAGGTGGTTTTTATGACGATGTGATGACGTGCTATTAGATGACAAGGATGC
CGCATACTCCCTCCGTTTCATATTATAAGACTTTCTAGCATTGCCCACAATCATATAGATGTTA
ATGAACCTATACACATATATATGTCTAGATTCATTAGCATCTATATCAATGTGGGCAATGCTAG
AAAGTCTTATAATATGAAATGGAGGAAGTAGCATACATGTCCTGGCAGCATATAAAAATAATTT
TAAAAAAACTGTAGCCCCACATGTTATCTTCTTCCCCTTCTCCCTCTTCTTCTCCCTTCCCTGC
ATCCTTCTCAGCTCAGCACAATAGTGGATGTCAAGAGTTCGCTGAGCACTTGCAGCCTCTATGT
TGCATCAGCTCAAGCAGACACAGGGAGTGGCCAACCCAGGCAAATAGCACCGTGACGAAAGTGT
GCGAAGAAGGTGCCAACACCCATGTCGACTGTCAAGGGACGCAGGAGGAGTTCATGACGATCGA
GTGGCATTCTACATCACTTTTTATATTTGTGGGATATATAGATGTGCAATTTTTTATTTTTTTT
ATATATAGTTATATAATAGGCAAATATAATAACAACCAGAAGTCAGATATCAAAGATGATATCA
AATGTATGACATGTGAGCCCTATATTTCTGATATGTTTTTTAGCTAACGGGCCACATCAGCAAC
TCTATGTGAATGCCATGTTAGGTAAGGAGGGGCACATCATTACCATGTCAACGCAAAACCACCT
AAATTGATCTGAGAGATGAAAACAAATGGTCTTGAGAGTTAAGAGACTCAAATCAGACCATTCT
ATAGTTAAGGGATAAAATCAGTCCAAAGCCAAAGTTGAGGTACCAAATACGAATTTTTTCCAAT
AAAATGTAATTATAGCTACAGACAATTATAGGTAACCGTAAAAAAAAATTCAGCATGGTTGAAT
GTGGTAGAAGATACCTGTTTTATTGGGCACATATCCAATAGGAGATCACTTAGTTCAATCTCTA
CTTCTACAGCTTCTGCATCTGGAATACTGTGGTCAAGTTGACCAAAAGAATTTTGTAAAGATAG
ATTTGCTGGATCCAAGCGCATTAAACTTTCAACATCATTCCTTGAGAGGAGAATATAACTTTGT
TTTTCAAGGACAGCCTGCAATTTTTACACAACATAAAAGGATCATGAAGCTACATACATCAAGG
AAGAAAATAGAGTATGAACTACCCACTTTTAAGATTTGTCGTAAGCCAAATCAATGATTAGGTG
AGCCTAGGCAGAGGTAGGTGGCTAGAAGGCCTAGGCAGGAGGGTGCCACTAGTACATCGGATCG
CGCCGCCTCTTACATACAATACTGTGTACTGATGCTTAGGTATTGCAACATATACAAATTTGTT
TTACATTATTATTCGGAACAAAAAAAACTAACATTTACCATTAGACCTATTCACAAGTTTCACA
AAACTACTATAAAATCTAGAATAATTGTTTTCACATGAAGTTCCAAAATGGTTAAACCATAATA
ACCACAAGGAAGATAGGTTAAGTTATAACAATGATGTAGTACAGAACTTAACATAGGGTTGTTC
CATGGTTGTAGTGCTTCAAAGTTCAAACAGGGAAGGTTCAAATGTTTAGTCCACCAATGTTCTC
TTATTTTACTATTGAATTATCTAACTATAGACACGGTGCCAACCAGCCTTTATATGCTCATTTA
TTATCTAATTACAAACATGGAAGCAAAACACAGAAGTTCACCTGCTGCAACAAAACTACAAAAT
GTGTTGTATCAGCCTACTACTTTCAGAAGAGAAGAGTGCTACGATGCAAATAGCAGTTTCAATG
GTTCTAGCTAGGAGATTGGTTAGAGACTTCCCATTTTTTGAACTTGTAACCCTGAATATCGGAA
TAGCTTCATGTGCTATCTCCAAACAAAAGGTCCATTCTGGTATTTATTTGTCTAAAGTACATAG
GCACACAATGTATGACCTATCAGAGAAGCCAATGTACAATGCACAGAGAAACGCACCAACATGA
CAGATAGTTTCCAGCACATTACAGCTCAACGATCAAAAAGATAATATGCGATGACCTTTACATC
AATGTGGACACTTCTCAGTCAAATACATATAATAGAGCATTGAAAAATAATGGTGTCATACCGA
GTAACTGCTACATTTGGAAAAATTCAAACTCCCTTAGACATAAAAGTTTCTTATGGTTCCAAAC
CAGAGTAATTCTAGCCAAAGATATTTTTAGTAAAAACAAAAATGAAGATGTAGTTCTAAATGTT
GTTTTTTATTCTAATTAAACTGTACAGAATCTTCTATTTTAAATTGTATCTGTGTTAGGTTCAT
AGGGTGCATGATTCAAATAGCTTTTGGAAAATCACCACCGATTTTTTTTAAAAAAAAATCTAAA
GAATCTAATTTTGGTTGGGGCAACTGGCAAGTGCTATATGTCGATCTATATGAAGAAGTCGTAA
TGATGTGGTTTTTGAGAATGCAAATGTTAATTCTCCTATGCAGGTAGTCTTTAGGTGCACCCAC
TGGATTTGGGTTTTGACTTAGCTGCAAAAGGAGGAATGGCACCATATGAAACCAGCATGTTGTC
TATTGGAGAGAAGTTTGATGAAAATATTCATCAAGGATGGATATTGGATGGATATTTTCTGATA
GTATTTGTGCTTGACAACATTCCTATCATTGAGGTTTTTTTCATTGAACCATTTACTGTTTTAT
GGTGCATTAGATAAGAACTACAACTTTGTAACTAGAAAGGGCTACACCTTTTGTAACAGGAAAC
AGATGTGAGCTGATATGAGGATGGGACTTATTCCCTCCATCTACTTTTGATAGTCATATTTTAT
CTTTGCACACAGACCAAGAATAAGTAATTCTACTTATCATCCATTTAAATATGCTACTAATTAT
TCATCGTAAACAAGCAATTCATTAATATTTACATTTCTCAATGCCCATGTAGCCAATCTTGTGT
GGAAGAATGAAGAGTCACGCATTAAATCCGAGAAAGTCATTAAGATGATAGGTTGTTGGATTGA
AATATGCCTATCAAAAATAGATGGAGGGAGTATTACTCTATCTCGATAAAATTCCCAGCACATT
AATCATAATCATTTCAAACAACAAAATTGTTGATGTACAAAAAGAAAGGTTGCATCAAAATAAA
TCCTCAAAATACAGAAAGTGAATTGGCAATTTAGCATACCTCCATATAGGATGCACGGCATCTT
TCATGTGTACGTTCTAAAAATGTGCGAACATACTCAACAAGCTCAGTGGCATAGTTCGGCATCA
ATTGAACCCATCCAAGTACCTAAGGAGAATTTGAGAAAACTATGATAAATATGATTAGAACTTG
CAGACAAGGTAACACATCAATTGTTTGGTAAATACCTCTTTGGCTATTATATCGACAGCCAAAA
GCCCTTGTAGTACAGGACGCCCATTTTCGACTAATGGACTATACACTGAGGTTGCATGGACACG
CGGTCTAAATGCGGCTGGAC
						
					

			
		

Sequences
Splice junction sequence	ATATCGACAGCCAAAAGCCCTTGTAGTACAGGACGCCCATTTTCGACTAATGGACTATACACTG AGGTTGCATGGACACGCGGTCTAAATGCGGCTGGACctttcaactgaatccgctaaatattcca atgaatcactaagagatgctaacagtatcaatttctggtcatcatggatcaagttttcctgcat atccagag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTCAACTGAATCCGCTAAATATTCCAATGAATCACTAAGAGATGCTAACAGTATCAATTTCT GGTCATCATGGATCAAGTTTTCCTGCATATCCAGAGAAAAGGTTTCATTCAACAAATAGGAGAA AAAAATTGTAAAACCAGAATTGTTCTGACGCCAATTGAACAAAACTAGCACGAGAAACAGGTTT TCCATCCTTTTCTGGCAGATGGACATGTATCTCAATTCGGACATAACATATCAGCCAAAAGCTT GCAACGTATACACATGATAAGGTCACACCAGAACTGTGATGTAGAAACAGCTGATCACATGGCA TACATGTAAACTCTGAAATCATTGGAGTTATGTCCCTCGACTCTTAAAGCTGTTTGTTTTTCAT CCTTCTGACAGTTTAGGTGGTTTTTATGACGATGTGATGACGTGCTATTAGATGACAAGGATGC CGCATACTCCCTCCGTTTCATATTATAAGACTTTCTAGCATTGCCCACAATCATATAGATGTTA ATGAACCTATACACATATATATGTCTAGATTCATTAGCATCTATATCAATGTGGGCAATGCTAG AAAGTCTTATAATATGAAATGGAGGAAGTAGCATACATGTCCTGGCAGCATATAAAAATAATTT TAAAAAAACTGTAGCCCCACATGTTATCTTCTTCCCCTTCTCCCTCTTCTTCTCCCTTCCCTGC ATCCTTCTCAGCTCAGCACAATAGTGGATGTCAAGAGTTCGCTGAGCACTTGCAGCCTCTATGT TGCATCAGCTCAAGCAGACACAGGGAGTGGCCAACCCAGGCAAATAGCACCGTGACGAAAGTGT GCGAAGAAGGTGCCAACACCCATGTCGACTGTCAAGGGACGCAGGAGGAGTTCATGACGATCGA GTGGCATTCTACATCACTTTTTATATTTGTGGGATATATAGATGTGCAATTTTTTATTTTTTTT ATATATAGTTATATAATAGGCAAATATAATAACAACCAGAAGTCAGATATCAAAGATGATATCA AATGTATGACATGTGAGCCCTATATTTCTGATATGTTTTTTAGCTAACGGGCCACATCAGCAAC TCTATGTGAATGCCATGTTAGGTAAGGAGGGGCACATCATTACCATGTCAACGCAAAACCACCT AAATTGATCTGAGAGATGAAAACAAATGGTCTTGAGAGTTAAGAGACTCAAATCAGACCATTCT ATAGTTAAGGGATAAAATCAGTCCAAAGCCAAAGTTGAGGTACCAAATACGAATTTTTTCCAAT AAAATGTAATTATAGCTACAGACAATTATAGGTAACCGTAAAAAAAAATTCAGCATGGTTGAAT GTGGTAGAAGATACCTGTTTTATTGGGCACATATCCAATAGGAGATCACTTAGTTCAATCTCTA CTTCTACAGCTTCTGCATCTGGAATACTGTGGTCAAGTTGACCAAAAGAATTTTGTAAAGATAG ATTTGCTGGATCCAAGCGCATTAAACTTTCAACATCATTCCTTGAGAGGAGAATATAACTTTGT TTTTCAAGGACAGCCTGCAATTTTTACACAACATAAAAGGATCATGAAGCTACATACATCAAGG AAGAAAATAGAGTATGAACTACCCACTTTTAAGATTTGTCGTAAGCCAAATCAATGATTAGGTG AGCCTAGGCAGAGGTAGGTGGCTAGAAGGCCTAGGCAGGAGGGTGCCACTAGTACATCGGATCG CGCCGCCTCTTACATACAATACTGTGTACTGATGCTTAGGTATTGCAACATATACAAATTTGTT TTACATTATTATTCGGAACAAAAAAAACTAACATTTACCATTAGACCTATTCACAAGTTTCACA AAACTACTATAAAATCTAGAATAATTGTTTTCACATGAAGTTCCAAAATGGTTAAACCATAATA ACCACAAGGAAGATAGGTTAAGTTATAACAATGATGTAGTACAGAACTTAACATAGGGTTGTTC CATGGTTGTAGTGCTTCAAAGTTCAAACAGGGAAGGTTCAAATGTTTAGTCCACCAATGTTCTC TTATTTTACTATTGAATTATCTAACTATAGACACGGTGCCAACCAGCCTTTATATGCTCATTTA TTATCTAATTACAAACATGGAAGCAAAACACAGAAGTTCACCTGCTGCAACAAAACTACAAAAT GTGTTGTATCAGCCTACTACTTTCAGAAGAGAAGAGTGCTACGATGCAAATAGCAGTTTCAATG GTTCTAGCTAGGAGATTGGTTAGAGACTTCCCATTTTTTGAACTTGTAACCCTGAATATCGGAA TAGCTTCATGTGCTATCTCCAAACAAAAGGTCCATTCTGGTATTTATTTGTCTAAAGTACATAG GCACACAATGTATGACCTATCAGAGAAGCCAATGTACAATGCACAGAGAAACGCACCAACATGA CAGATAGTTTCCAGCACATTACAGCTCAACGATCAAAAAGATAATATGCGATGACCTTTACATC AATGTGGACACTTCTCAGTCAAATACATATAATAGAGCATTGAAAAATAATGGTGTCATACCGA GTAACTGCTACATTTGGAAAAATTCAAACTCCCTTAGACATAAAAGTTTCTTATGGTTCCAAAC CAGAGTAATTCTAGCCAAAGATATTTTTAGTAAAAACAAAAATGAAGATGTAGTTCTAAATGTT GTTTTTTATTCTAATTAAACTGTACAGAATCTTCTATTTTAAATTGTATCTGTGTTAGGTTCAT AGGGTGCATGATTCAAATAGCTTTTGGAAAATCACCACCGATTTTTTTTAAAAAAAAATCTAAA GAATCTAATTTTGGTTGGGGCAACTGGCAAGTGCTATATGTCGATCTATATGAAGAAGTCGTAA TGATGTGGTTTTTGAGAATGCAAATGTTAATTCTCCTATGCAGGTAGTCTTTAGGTGCACCCAC TGGATTTGGGTTTTGACTTAGCTGCAAAAGGAGGAATGGCACCATATGAAACCAGCATGTTGTC TATTGGAGAGAAGTTTGATGAAAATATTCATCAAGGATGGATATTGGATGGATATTTTCTGATA GTATTTGTGCTTGACAACATTCCTATCATTGAGGTTTTTTTCATTGAACCATTTACTGTTTTAT GGTGCATTAGATAAGAACTACAACTTTGTAACTAGAAAGGGCTACACCTTTTGTAACAGGAAAC AGATGTGAGCTGATATGAGGATGGGACTTATTCCCTCCATCTACTTTTGATAGTCATATTTTAT CTTTGCACACAGACCAAGAATAAGTAATTCTACTTATCATCCATTTAAATATGCTACTAATTAT TCATCGTAAACAAGCAATTCATTAATATTTACATTTCTCAATGCCCATGTAGCCAATCTTGTGT GGAAGAATGAAGAGTCACGCATTAAATCCGAGAAAGTCATTAAGATGATAGGTTGTTGGATTGA AATATGCCTATCAAAAATAGATGGAGGGAGTATTACTCTATCTCGATAAAATTCCCAGCACATT AATCATAATCATTTCAAACAACAAAATTGTTGATGTACAAAAAGAAAGGTTGCATCAAAATAAA TCCTCAAAATACAGAAAGTGAATTGGCAATTTAGCATACCTCCATATAGGATGCACGGCATCTT TCATGTGTACGTTCTAAAAATGTGCGAACATACTCAACAAGCTCAGTGGCATAGTTCGGCATCA ATTGAACCCATCCAAGTACCTAAGGAGAATTTGAGAAAACTATGATAAATATGATTAGAACTTG CAGACAAGGTAACACATCAATTGTTTGGTAAATACCTCTTTGGCTATTATATCGACAGCCAAAA GCCCTTGTAGTACAGGACGCCCATTTTCGACTAATGGACTATACACTGAGGTTGCATGGACACG CGGTCTAAATGCGGCTGGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017763 						
					
						PMCS
						0.102180762

Conservation Information
Conserved circRNAs	osi_circ_017763
PMCS	0.102180762

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13747600-13745132(+)
13747583-13743723(+)
13747398-13747597(-)
						
						Potential amino acid sequence
						
							MRLDLSTESAKYSNESLRDANSINFWSSWIKFSCFIGHISNRRSLSSISTSTASASGILWSS*(
+)
MDTRSKCGWTFQLNPLNIPMNH*(+)
MPNYATELVEYVRTFLERTHERCRASYMEAVLEKQSYILLSRNDVESLMRLDPANLSLQNSFGQ
LDHSIPDAEAVEVEIELSDLLLDMCPIKQENLIHDDQKLILLASLSDSLEYLADSVERSSRI*(
-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13747600-13745132(+) 13747583-13743723(+) 13747398-13747597(-)
Potential amino acid sequence	MRLDLSTESAKYSNESLRDANSINFWSSWIKFSCFIGHISNRRSLSSISTSTASASGILWSS( +) MDTRSKCGWTFQLNPLNIPMNH(+) MPNYATELVEYVRTFLERTHERCRASYMEAVLEKQSYILLSRNDVESLMRLDPANLSLQNSFGQ LDHSIPDAEAVEVEIELSDLLLDMCPIKQENLIHDDQKLILLASLSDSLEYLADSVERSSRI*( -)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os08g0318500_circ_g.7

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