Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os08g0318500_circ_g.2 |
ID in PlantcircBase | osa_circ_036672 |
Alias | NA |
Organism | Oryza sativa |
Position | chr8: 13741324-13747610 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os08g0318500 |
Parent gene annotation |
Sec8 exocyst complex component specific domain containing protei n. (Os08t0318500-01) |
Parent gene strand | - |
Alternative splicing | Os08g0318500_circ_g.1 Os08g0318500_circ_g.3 Os08g0318500_circ_g.4 Os08g0318500_circ_g.5 Os08g0318500_circ_g.6 Os08g0318500_circ_g.7 Os08g0318500_circ_g.8 Os08g0318500_circ_g.9 Os08g0318500_circ_g.10 Os08g0318500_circ_g.11 Os08g0318500_circ_g.12 Os08g0318500_circ_g.13 Os08g0318500_circ_g.14 Os08g0318500_circ_g.15 Os08g0318500_circ_g.16 Os08g0318500_circ_g.17 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os08t0318500-01:8 |
Conservation Information | |
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Conserved circRNAs | osi_circ_017760 |
PMCS | 0.097980633 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13747583-13741387(+) 13741353-13747559(-) 13747398-13747559(-) |
Potential amino acid sequence |
MDTRSKCGWTCSSAIEFLHICWTPNKLIDFI*(+) MQKFYSTRTGPAAFRPRVHATSVYSPLVENGRPVLQGLLAVDIIAKEVLGWVQLMPNYATELVE YVRTFLERTHERCRASYMEAVLEKQSYILLSRNDVESLMRLDPANLSLQNSFGQLDHSIPDAEA VEVEIELSDLLLDMCPIKQENLIHDDQKLILLASLSDSLEYLADSVERLGESFINSSTMLENKN HIHQGRHTRSTSAIPKSLASLANEYRRLAIDCVRVLRLEMQLETIYHMQEMTKREYVEDQDAED PDDFIISLTTQIARRDEEMAPYIAESKRNYVFGGISSVAANASIKALAQMKSINLLGVQQICRN SIALEQVQPHLDRVSMQPQCIVH*(-) MPNYATELVEYVRTFLERTHERCRASYMEAVLEKQSYILLSRNDVESLMRLDPANLSLQNSFGQ LDHSIPDAEAVEVEIELSDLLLDMCPIKQENLIHDDQKLILLASLSDSLEYLADSVERLGESFI NSSTMLENKNHIHQGRHTRSTSAIPKSLASLANEYRRLAIDCVRVLRLEMQLETIYHMQEMTKR EYVEDQDAEDPDDFIISLTTQIARRDEEMAPYIAESKRNYVFGGISSVAANASIKALAQMKSIN LLGVQQICRNSIALEQVQPHLDRVSMQPQCIVH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |