Plant Circular RNA Database

Detail information of Os08g0318500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os08g0318500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_036671
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 13741324-13743141  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0318500						
					
						Parent gene annotation
						
							Sec8 exocyst complex component specific domain containing protei
n. (Os08t0318500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0318500_circ_g.2 Os08g0318500_circ_g.3 Os08g0318500_circ_g.4 Os08g0318500_circ_g.5 Os08g0318500_circ_g.6 Os08g0318500_circ_g.7 Os08g0318500_circ_g.8 Os08g0318500_circ_g.9 Os08g0318500_circ_g.10 Os08g0318500_circ_g.11 Os08g0318500_circ_g.12 Os08g0318500_circ_g.13 Os08g0318500_circ_g.14 Os08g0318500_circ_g.15 Os08g0318500_circ_g.16 Os08g0318500_circ_g.17 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0318500-01:4

General Information
CircRNA Name	Os08g0318500_circ_g.1
ID in PlantcircBase	osa_circ_036671
Alias	NA
Organism	Oryza sativa
Position	chr8: 13741324-13743141 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0318500
Parent gene annotation	Sec8 exocyst complex component specific domain containing protei n. (Os08t0318500-01)
Parent gene strand	-
Alternative splicing	Os08g0318500_circ_g.2 Os08g0318500_circ_g.3 Os08g0318500_circ_g.4 Os08g0318500_circ_g.5 Os08g0318500_circ_g.6 Os08g0318500_circ_g.7 Os08g0318500_circ_g.8 Os08g0318500_circ_g.9 Os08g0318500_circ_g.10 Os08g0318500_circ_g.11 Os08g0318500_circ_g.12 Os08g0318500_circ_g.13 Os08g0318500_circ_g.14 Os08g0318500_circ_g.15 Os08g0318500_circ_g.16 Os08g0318500_circ_g.17
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0318500-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCTTTTCGGAATTGCACTAGTTGAGCGAGTATGGCGACCCTGGTGGATGTGATTTTTGTTCTCC
AACATGGTAGATGAATTAATGAATGACTCTCCAAGCctgttctagtgctatagaatttctgcat
atttgttggacccctaacaaattgatcgacttcatctgagcgagtgcctgaaaaatatttcaca
attcaagt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 451
Transcript exons: 13741324-13741398,13742268-13742369,13742784-13742861,13
742946-13743141
CTGTTCTAGTGCTATAGAATTTCTGCATATTTGTTGGACCCCTAACAAATTGATCGACTTCATC
TGAGCGAGTGCCTTTATCGATGCATTAGCAGCAACGCTAGAAATCCCACCAAATACATAATTCC
TTTTAGATTCTGCAATATAAGGAGCCATTTCTTCATCCCTACGTGCGATCTGAGTTGTTAGTGA
GATGATGAAGTCATCAGGATCTTCAGCATCTTGATCTTCTACATATTCTCTTTTCGTCATTTCC
TGCATGTGATATATAGTTTCTAATTGCATTTCCAATCTCAAGACTCTGACACAATCAATTGCTA
GCCTTCTATACTCATTAGCAAGTGATGCAAGGCTTTTCGGAATTGCACTAGTTGAGCGAGTATG
GCGACCCTGGTGGATGTGATTTTTGTTCTCCAACATGGTAGATGAATTAATGAATGACTCTCCA
AGC
						
					

						Genomic sequence
						
							CTGTTCTAGTGCTATAGAATTTCTGCATATTTGTTGGACCCCTAACAAATTGATCGACTTCATC
TGAGCGAGTGCCTGAAAAATATTTCACAATTCAAGTTAGCAGTGAGCAAGAATATCATAGTACC
AAGAAACCAAACCGTACCAGCCTTAATTAGCTAATCGAGGCAGTCAGATTAGCAAAGAAATCAG
CTTCGGCTCAGGTACGAACATAAAGTTGGTCTATCATTGTTCAGGTCGGTCTTGATGCTTCAGA
GATCGAACCAACCAAATAACCCAATCTACTAAGAAACACACAATCATACTTTCTAAACTTCTCT
CTAAAATTGATGTTGTTAGACATTATATAATTCAAATGCAAAGTCTGTAAGTTCTAAAGATCGT
TAGATCAGAGTTCTTCACATAATCAGGCCATCAGGGTGCGCAGATGCTGCTGCGCGACAGGATG
GCAAAACTCTTCTGGCGGCTTCCCAAGCAGTTGGCTGACCCCACAAGTGACATAGGTTACCGCA
AGGTTCTTATTCATTTATTGTATCATGTAATGGACATTGTCTCCTATAAATTTGTTATTTATCG
TCACCATATGCTACAACATTTGGAGCTTCAGAACAGGGACAGATAATTATTGGAAGACATTCAC
GTGAACTAAGTACTGTATACGTGATCATGTAGTGCCCTCTCAAGCAGTGATGACTTGTTAAATA
CTTGAACCCATACTGCACTATAGTTTGTCATTCTTAGTAGAGTTGAATAAACCGACAATGTTAT
TCAGTCAATTAGGTTCGGTTTGTATTTTTAGCTGGCTAATTTGGGTTTCAATATCATTAAACTG
AAATATATAGTTTGGTCTGAAGTTCTCTAGCAACCAACCATACCAACCGAATGATTGCCATTCA
AGTACCACAAATATGACATCTGGAACTATAGCAAGAAGCATAACAAACCTTTATCGATGCATTA
GCAGCAACGCTAGAAATCCCACCAAATACATAATTCCTTTTAGATTCTGCAATATAAGGAGCCA
TTTCTTCATCCCTACGTGCGATCTGTTCAGATTGGAAAAATCAGTAGTCAGCGTATGTTGTATG
GCTCACATAAGTTGAATAGATAGCATTGCACACCGTGTACACATGAGAGTACCATATGGTACAT
AAAACTGGATGCCTATGCACAAGAACCAATACTCCTATTGTTACAGAAAATTATTTTACCAATC
CTAATATACTTAAATCAGATTTGAGTTTAAATATTGCAAAACAGTTGCTCATTTTTCCCTTGTA
TAGAATTATGCCACTATCCAACAAGTTTATATACCATGCACTCAGCCTTGTATGTACACATTGT
TGATTCTTCATTTCTTAGTTTCCTGAGACATCCTCCCAGTTTGCGTGGGATATATCAGATTAGG
AAATATGCTCAACAAGGTATCAAAATTAAACAAAACTAAAAGAGAACAATACCTGAGTTGTTAG
TGAGATGATGAAGTCATCAGGATCTTCAGCATCTTGATCTTCTACATATTCTCTTTTCGTCATT
TCCTATTTAAAAATCATGCTAGTATCAAAATCTTGACATAACATAAATCCATCAATAAACATGT
GGCGCTACAAGAGTGCTATTACCTGCATGTGATATATAGTTTCTAATTGCATTTCCAATCTCAA
GACTCTGACACAATCAATTGCTAGCCTTCTATACTCATTAGCAAGTGATGCAAGGCTTTTCGGA
ATTGCACTAGTTGAGCGAGTATGGCGACCCTGGTGGATGTGATTTTTGTTCTCCAACATGGTAG
ATGAATTAATGAATGACTCTCCAAGC
						
					

			
		

Sequences
Splice junction sequence	GCTTTTCGGAATTGCACTAGTTGAGCGAGTATGGCGACCCTGGTGGATGTGATTTTTGTTCTCC AACATGGTAGATGAATTAATGAATGACTCTCCAAGCctgttctagtgctatagaatttctgcat atttgttggacccctaacaaattgatcgacttcatctgagcgagtgcctgaaaaatatttcaca attcaagt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 451 Transcript exons: 13741324-13741398,13742268-13742369,13742784-13742861,13 742946-13743141 CTGTTCTAGTGCTATAGAATTTCTGCATATTTGTTGGACCCCTAACAAATTGATCGACTTCATC TGAGCGAGTGCCTTTATCGATGCATTAGCAGCAACGCTAGAAATCCCACCAAATACATAATTCC TTTTAGATTCTGCAATATAAGGAGCCATTTCTTCATCCCTACGTGCGATCTGAGTTGTTAGTGA GATGATGAAGTCATCAGGATCTTCAGCATCTTGATCTTCTACATATTCTCTTTTCGTCATTTCC TGCATGTGATATATAGTTTCTAATTGCATTTCCAATCTCAAGACTCTGACACAATCAATTGCTA GCCTTCTATACTCATTAGCAAGTGATGCAAGGCTTTTCGGAATTGCACTAGTTGAGCGAGTATG GCGACCCTGGTGGATGTGATTTTTGTTCTCCAACATGGTAGATGAATTAATGAATGACTCTCCA AGC
Genomic sequence	CTGTTCTAGTGCTATAGAATTTCTGCATATTTGTTGGACCCCTAACAAATTGATCGACTTCATC TGAGCGAGTGCCTGAAAAATATTTCACAATTCAAGTTAGCAGTGAGCAAGAATATCATAGTACC AAGAAACCAAACCGTACCAGCCTTAATTAGCTAATCGAGGCAGTCAGATTAGCAAAGAAATCAG CTTCGGCTCAGGTACGAACATAAAGTTGGTCTATCATTGTTCAGGTCGGTCTTGATGCTTCAGA GATCGAACCAACCAAATAACCCAATCTACTAAGAAACACACAATCATACTTTCTAAACTTCTCT CTAAAATTGATGTTGTTAGACATTATATAATTCAAATGCAAAGTCTGTAAGTTCTAAAGATCGT TAGATCAGAGTTCTTCACATAATCAGGCCATCAGGGTGCGCAGATGCTGCTGCGCGACAGGATG GCAAAACTCTTCTGGCGGCTTCCCAAGCAGTTGGCTGACCCCACAAGTGACATAGGTTACCGCA AGGTTCTTATTCATTTATTGTATCATGTAATGGACATTGTCTCCTATAAATTTGTTATTTATCG TCACCATATGCTACAACATTTGGAGCTTCAGAACAGGGACAGATAATTATTGGAAGACATTCAC GTGAACTAAGTACTGTATACGTGATCATGTAGTGCCCTCTCAAGCAGTGATGACTTGTTAAATA CTTGAACCCATACTGCACTATAGTTTGTCATTCTTAGTAGAGTTGAATAAACCGACAATGTTAT TCAGTCAATTAGGTTCGGTTTGTATTTTTAGCTGGCTAATTTGGGTTTCAATATCATTAAACTG AAATATATAGTTTGGTCTGAAGTTCTCTAGCAACCAACCATACCAACCGAATGATTGCCATTCA AGTACCACAAATATGACATCTGGAACTATAGCAAGAAGCATAACAAACCTTTATCGATGCATTA GCAGCAACGCTAGAAATCCCACCAAATACATAATTCCTTTTAGATTCTGCAATATAAGGAGCCA TTTCTTCATCCCTACGTGCGATCTGTTCAGATTGGAAAAATCAGTAGTCAGCGTATGTTGTATG GCTCACATAAGTTGAATAGATAGCATTGCACACCGTGTACACATGAGAGTACCATATGGTACAT AAAACTGGATGCCTATGCACAAGAACCAATACTCCTATTGTTACAGAAAATTATTTTACCAATC CTAATATACTTAAATCAGATTTGAGTTTAAATATTGCAAAACAGTTGCTCATTTTTCCCTTGTA TAGAATTATGCCACTATCCAACAAGTTTATATACCATGCACTCAGCCTTGTATGTACACATTGT TGATTCTTCATTTCTTAGTTTCCTGAGACATCCTCCCAGTTTGCGTGGGATATATCAGATTAGG AAATATGCTCAACAAGGTATCAAAATTAAACAAAACTAAAAGAGAACAATACCTGAGTTGTTAG TGAGATGATGAAGTCATCAGGATCTTCAGCATCTTGATCTTCTACATATTCTCTTTTCGTCATT TCCTATTTAAAAATCATGCTAGTATCAAAATCTTGACATAACATAAATCCATCAATAAACATGT GGCGCTACAAGAGTGCTATTACCTGCATGTGATATATAGTTTCTAATTGCATTTCCAATCTCAA GACTCTGACACAATCAATTGCTAGCCTTCTATACTCATTAGCAAGTGATGCAAGGCTTTTCGGA ATTGCACTAGTTGAGCGAGTATGGCGACCCTGGTGGATGTGATTTTTGTTCTCCAACATGGTAG ATGAATTAATGAATGACTCTCCAAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.229020645

Conservation Information
Conserved circRNAs	NA
PMCS	0.229020645

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13743129-13741387(+)
13741353-13743010(-)
13743112-13743123(-)
						
						Potential amino acid sequence
						
							MTLQACSSAIEFLHICWTPNKLIDFI*(+)
MQKFYSTRTGLESHSLIHLPCWRTKITSTRVAILAQLVQFRKALHHLLMSIEG*(-)
MLENKNHIHQGRHTRSTSAIPKSLASLANEYRRLAIDCVRVLRLEMQLETIYHMQEMTKREYVE
DQDAEDPDDFIISLTTQIARRDEEMAPYIAESKRNYVFGGISSVAANASIKALAQMKSINLLGV
QQICRNSIALEQAWRVIH*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13743129-13741387(+) 13741353-13743010(-) 13743112-13743123(-)
Potential amino acid sequence	MTLQACSSAIEFLHICWTPNKLIDFI(+) MQKFYSTRTGLESHSLIHLPCWRTKITSTRVAILAQLVQFRKALHHLLMSIEG(-) MLENKNHIHQGRHTRSTSAIPKSLASLANEYRRLAIDCVRVLRLEMQLETIYHMQEMTKREYVE DQDAEDPDDFIISLTTQIARRDEEMAPYIAESKRNYVFGGISSVAANASIKALAQMKSINLLGV QQICRNSIALEQAWRVIH*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0318500_circ_g.1

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