Detail information of BGIOSGA027201_circ_g.12


General Information
CircRNA Name BGIOSGA027201_circ_g.12
ID in PlantcircBase osi_circ_017768
Alias Chr08:14085671_14089921(MH63RS2), Chr08:14085671_14089921(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 14879372-14883625  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA027201
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA027201_circ_g.1 BGIOSGA027201_circ_g.2 BGIOSGA027201_circ_g.3 BGIOSGA027201_circ_g.4 BGIOSGA027201_circ_g.5 BGIOSGA027201_circ_g.6 BGIOSGA027201_circ_g.7 BGIOSGA027201_circ_g.8 BGIOSGA027201_circ_g.9 BGIOSGA027201_circ_g.10 BGIOSGA027201_circ_g.11 BGIOSGA027201_circ_g.13 BGIOSGA027201_circ_g.14 BGIOSGA027201_circ_g.15 BGIOSGA027201_circ_g.16 BGIOSGA027201_circ_g.17 BGIOSGA027201_circ_g.18 BGIOSGA027201_circ_g.19 BGIOSGA027201_circ_g.20 BGIOSGA027201_circ_g.21
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA027201-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACAGGCCATGCTAAGCTGTTCAGTGTGTACCTTCGTTTGGCGCAGTGATTGCTGCATCCGTA
ATGCGAAAAGCAAAAGAAAGGCCTTCTGATCCATCCctagatatagcctgttgaacacattttc
ggtaatctacaaatattgctggcaagaagtgctccttcaagaagttgttcacaaaagccaatag
cccatcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAGATATAGCCTGTTGAACACATTTTCGGTAATCTACAAATATTGCTGGCAAGAAGTGCTCCT
TCAAGAAGTTGTTCACAAAAGCCAATAGCCCATCATTCCTACAGAAATTTAAGAGCGATAATGA
ATCAAATTCATCAAAGTTCTCACATTTCAAAGTTGGAAATTGCAAATATTCCGTACAAGTGCTT
TCTTTTAAACAAGGATTGAGCTTTAGAAAAAGAACCAAACAGCTCTTACCATTTTTTTTTTGTC
TTTAACTTGTCATTTTATCACAAAATGCAAGGAAGGTTTTTAGTCCTTTTTGTTTATGGTAATA
GCAGAATTTCCATGACAAACCAGATACTTGTTTGTAGACTAGTGGGCAAGTTTTATTCTTTTTA
CTGCACACATTCTGAAATGACATCTACTTGAGAGAACATAATAGGAAGTAGATGCGAACAGAGA
CAACCATATATCCCAGAAATTTGAGAAAAGCTTTCTGGTCATCTAGATCATCCAGGTGTTATCA
TTTGTATGCATAAAATGAAAGAAGTAATTTCAGTTACCCCCTCTGTTCGAAAATATAAGCATTT
CTGGGGCTATGTACCTGGATGGAGGGATGTAGAAATGCTTGTATTTTGGAATGGAGGGAGTAGT
TATTGAGTTATTTATGCAAGCAGTAAAACAGAAGTATTTTTGCAACATAAAGTTCAGACAAAAT
AGTACCTCCTTCCATATAAATAACTACAGGTTCCTTTTTTGAGGAGAAAGAGTCGGTTGCGGAG
AAATTTGTCTTATGTAAGGAAATTTTTTCTTGGGTGAAGAAAAACATTATTTCCCAGTGTTGTT
TTGGAAAAGCTGTATGGTATATTGACAATTGCGCACAGTGCACTACAGGAATGTCCCTTGGAGA
AATTCCAGGTAATTGTATGAACAGAAACTACATCCGTCCTTAAATGCTGAAGTTTCTGCATTAA
TAATATGAACCCAATCTTTCTACTATATAAACAGGTATATGTGAACAAACATCATGCTGAGAAG
CTGTTTTGCATGTTTACAATTGCTGCAGACAGGGAACAGGAAGTTATAGGAAGGGAAAATGACT
ATAAATCAAAAAAGGCTTAAGGTTATCTGCAAAAGAAATTCTAGGCATTTATAGCAAGTTATAG
GCTTCTTTTTAGATGATTTTTGTTTTCCGTACACTAGGTCAATATGCAGGGGAAAAGTTGATTA
AAATTAGACATAGAGATGAATATTAAGATTACTACAACAGAACTTAGAAAATAATTCACTTGGC
AGCATAATCTAGTGACAGGTTTAAAATCGAAGCTCAAGATCCTCCAAAAACAACACCCTTTATT
TCTCTCTCCCTTCTCATGTGTAATAACTCTATTGTGTATCTTGAAATAAACGTACTTGAGGTGC
TCTAACATATAACAAGTGACTGGCACACAAACCCACAATGAAGTGTTTGGAACTCTGTAGTCTA
TACAGAAACGTGTGCATGTGCTACCAATTTTCGATACGTAGGGGGGGACATAACGGAAAAAATG
TGGTGTACTTAAAGTCTTAAAGTTACACAGCATATCATACAACTTCTATAGTTCACTAGGATAT
TAGAAGAAATCTTTGCATGGAAGAAGAAATTGTAGATTCACAGTCTCCACTGTGAACAAGAATA
GAAGTTAGAGATTTGAGGCATTACCCAAGTTGCCAATATTTCTGCGGAAGCATCAGTCCAATTT
TATTCATAAACTGCAGAAAGTACATAGATATCTCCATGAATAACTTGGTAAATATGCTGTGGTA
TGCGTGTGCAACAGACAACCATGAGACAGGTCACCTCAAATACAGGACGGTAAACTGATGCTGC
AAGGAAAATCCCTTGGTCAGGTATGACACTTGCTGTTCCATAGCCTTCTTGTGGTACTGTTGAG
TTTCTTCGCCATCCTTGACCTGCAACTTTGATCACTAAACATTAGAATCAAGTATTTATGCCAT
TTACTTAAAATGTACTCCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGTACGTGTTT
GTCCATTCGTCTTATTCAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATT
GTTAAATATACTTTCATGTACACATATAGTTTTACATATTTCACTTTTTTTTTAATAAGACGAA
CGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGAGGGAGTAAAAGCAA
AGTTAATGGTGTAATCTTTTATGCTTGGTCCTATCTGTACTACTCGTGTGTTTGCTAATAGAGA
GCCAAGCAATCTGATTCTCCATCACCATGGCCTTAGACCCGCTCTCCCCCATGTTATTTATTTT
GGTCATGGATGTCTTGAACTCAGTGGTCATGCTTCTCTTGAAGGTTGGTTGCAGTCCCTATCTA
TTCAGCATGCTCAACATAGATGCTCTTTTTAGGCTGACAATGTGGTTATGTTCCTAAGGCCAAC
AGTGAATGACATCACTATCATCAAGCAACTGTTGGATGTGTTCGGTCATGCTTCTGGGCTAGTG
ACTAATTTGCAAAAGAGCTCAGTCACTCCTATCCAGTGCAAAGAAGAAGATCTAGAAATAATTT
CCAACCTTCCCTCTTGTGGAGTAAAAGAGTTTCCCTGCACCTACCTGGGGTTGTCTCTCAATAT
TAAGAAATCTAGCAAAGCTAAACTGCAATTCTTGGTGGATAAGGTGGCTGACAACCTTCCTACA
TGGAAGGCTTCCCTCATGAACAGAGCTGGGAGACTCACCACGGTGAACTGAAAGTAGTTCTATC
AGCCATCCCAATTTATTTGATGATTGCAATGGATATCCCTAAATGGGTGATTAAGGCAATAGGT
AAAAGGTGAAGAGGTTTCCTATGGGTCAAGCACAAAAGGGCTAATGGTGGTAATTGTTTGGTTG
CATGGGAGCAGGTTTGTCGACCCCCTATGTACGGTGGTTTGGGGATTCACAACTTGGAGCTCAT
GAATTGGGTCCTTCGCATTCGGTGGCTTTGGTTGCAAAAGACTGATGGTGCTCGGGCTTGGCAA
GGATTGGACCTTCAAGTTCCAAGCAATGCTCATGTCATGTTCAATATGGCCATGGAAACAATGG
TTGGGAATGGTCAATCCATCTTGTTCTGGTCAGAAAGATGGATACAGGGCAGGACTGCAGAGGT
GGCCGCTAATCTTATCAATTTGGTCCAGAAAAAGGATATTAAAAACCATATTGTGGCACAGGCT
TTGGAAAACCATAGATGGACTACAGAAATCAGAGGAGCCCTCCCTGTCCAAGTCATCGTGGAGT
ATCTTCACTTGTGGGACTTGGTGGCTGAAGTGGAATTACAGGATGGCATCTCTGACCAGTACCA
CTGGAAGCTGGACAAGACTGGTGAGTATACTTGCAAGTCAGCCTACAAGTGCTTATTTGTTGGT
ACAGTTAGAATTGCACCTTGGAGAAAGATTTGGAAGAATTGGGCGCCATTGAGATGCAAGTTAT
TTCCTTGGCTTGTGTTTAACAAACGATGTCGGCCAGCAGACCAGCTTGCCAGTAGAGGGCTGTC
ACACCCCTCTGCCTGCCCTCTTTGTGATCAGACAGAAGAAACCATCCACCACCTTCTTTCTCTT
GACAAGTTTGGTATATAATCCTCCAAAAGATGGGCTGGCCCATATACCCCAGGTCCAGATACAG
CTAACTTATCAAGGTGGTGGTCAAGGATGCTGAGAGGAAGACAAAGACACCAAGAAAGAACTTA
GCTCTCTCATCATTCTGGTGCTGTGGGAGATTTGGAAGCATAAGAATGATTGTGTTTTTAACGG
TGCTAATTCTTGTGTAGCTACTGTCCTCCAAACAGTGGAAAATGAGTGTATCATGTGGTCGCTA
GCCAGGGCTTCTAGGCTAAAGGAGTTAATTGAAAGGTCAGTAGCCCCTTGGAGGTGAGGTTTTT
TTGCGTGCGTTGTAAAGGCTTCGGCTTGTTTTGGATCAGGTTGGTAGGCGCTGATCCTTTCCCA
TTCCTTTTTTCCTTCTCTTAATGAAATGATACGTAATTCTCTTGTGTATTCAAAAAAAAAAAGT
TAATGCAAAATATTTAAAGGCAGGACATGTAACATGAAAAAGAAAAGGATTCGAGTCCATACAG
GCCATGCTAAGCTGTTCAGTGTGTACCTTCGTTTGGCGCAGTGATTGCTGCATCCGTAATGCGA
AAAGCAAAAGAAAGGCCTTCTGATCCATCC
Conservation Information
Conserved circRNAs osa_circ_036685
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021