Detail information of POPTR_0014s02480_circ_ag.6


General Information
CircRNA Name POPTR_0014s02480_circ_ag.6
ID in PlantcircBase pop_circ_003410
Alias Chr14:2124481|2129070
Organism Populus trichocarpa
Position chr14: 2073778-2078367  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s02480_circ_ag.1 POPTR_0014s02480_circ_ag.2 POPTR_0014s02480_circ_ag.3 POPTR_0014s02480_circ_ag.4 POPTR_0014s02480_circ_ag.5 POPTR_0014s02480_circ_ag.7 POPTR_0014s02480_circ_ag.8 POPTR_0014s02480_circ_ag.9
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   TT-GG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAACCAAATCCTTCTGATCCTGCGCAAACTGATGGCTATCAGCTTTTTGTCCAGGTTTTTTA
TTTCAACATCTCAATCATCAGCTTTGATTTGATTGGttttgtattgaatttctatcttaagcaa
catggccgtgtctttgcaggacccgactgagtacaggagaaaggtgcgccaacaagccaagcaa
tatccacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTGTATTGAATTTCTATCTTAAGCAACATGGCCGTGTCTTTGCAGGACCCGACTGAGTACAG
GAGAAAGGTGCGCCAACAAGCCAAGCAATATCCACCTGCGCTCTGATGCAATGGTTGCTTCACC
ATGTCAGCAACTTATTAGCTAGATTCCATCATATATGTCCAAACCTCCTTTAAGTAACAGAGTG
ATTTAGTGTTGGTACTAGACTACGAGTTAATTGTCAAGTAGCTACGCTTCCCATTTCTGCACCA
GAGGTTTAGCAACATGACAACTTTTGGATATAAAACCTATATCGATTGCCCATTAAGTTTGTTA
TTTATACCTATGGCGAAGCAGCATGATATACTGGAAATTGGCTGTATGGGAAACCATGACTGAT
ACTTCTGAATTTGGTTAAAGCAAGTGTAAGCTTTTGAACAACTTTATCGGATGCTATGTTATAT
ATGAGAGCGTGTATGATCTGTATCACATACTCGTTTTTTCACCTTTTTATGTGTTTCAAGCATG
CAATAACACTGAATAATACTATTGGAGTTAGACGTCAGTGTAGGTTCATGCGAATCTAGGGAAG
TAAATAGACCGAATAGAGTGGTTTTCGGAGATGGTTTTTGTCCTTAGGATGGCCATCAGTGAAG
AATGCTGCAGCCGCTGCTGAAGCATTGTTTTGAGTAAGATGGCCTCCAATATTTTATGCATTTC
ATGACATAGATTCACAATTGTTTAAAGCTATCACGCTGTATTTATTGAACTGTACTGCAGGACT
CTTTAATTCTTCTGAGCACATTTTGACACAAATGTGTTGTCCAATATTCATACAAGATTAAGAT
AAGATGGCCTGGAATAAATTTTATTTTGTAGTGACTGCAAGTGTGTGTGAAGCATAACTGGGTC
ATTGATATTTGTTAAAAAGGTATGCAGAGGACCTTACTTTCTTTTCTCCAGTGACTGCCATTGC
GCCGAAGAGTGATTCACCTTGATCCCCCCTGTTCTGTTGCGTTTTTGTACGCTCTAATGTCCTC
ATTCGTATCTACCTATCAATGGTGATTCTTCATTTGCCCACACTTTCCGAGTCTAGTTGCCAAC
CGGCATTCCAAATTTAAGCACCTGAGTTATCAGCTTCTCATTGTAAAATTGCTCTGCAAAAACT
GGCCATGTGACAATGTGTACACAACACATATGCAGAGTTCCAGCCGCAGGGAGTAAATAACTCT
CCCAATCCCAACTGTTGGATTGTCCATTATTTGCACCTGCGGGGGCAATACCTTTATAACGAAT
CCTTCTGCCACTTTTCTTCAATTCATCCTCGTATTCTTCTGGCAGCCACCAGTCTTCCTGCTGA
TACAGGTTGTTGTTATCTTCTGTCAGATTTCAGGATTTTTCCTACATCCCAATTGAAAGACTGC
CTTGAATCTTCAAGTGCACTAGCAATTTCTGATATTTGACTCTTGCTGAATCTGATGAGGCTTC
CAAAACAAATGCAGAGAACGGACTTTGGTTTCTTAGAATCCAGCCAATGCAGGCAACTGTGTTT
ACACATTGAAGCCTTGTCACCTCTTTCTAGCCTATCATCTGCATTTCTATTGAACAGAGATACG
GGACCCGAGCCATGCTTTTATTCCAGTAACTTTTCTGAAATGATCAACACAGGCTAGCTCTTCC
TTTCAGCCTTCTTCAGTTCATCAAACAAAGAAGAGAGAACTTCGTTGTCAGGGACAAGTGATTC
TGTCTCAGATGCGACATTGCCGTGAGGTTGACAATAATCAATGCTGTTTGCAACACCAAGATTG
AAGAATCCACTGCCACTAAAGGCAAGCCTTGGTATGCCAAGCTCAATGGCAACATCAACAGTCC
ATGGAAACTGACAATCAGAGGCAGTGCAAGATCGTTTTAACCTGTGGTTGCAGCAACTCTATTC
CATGAAATAATTTTAAAGCCATTTTCGGGGCCCCTGTGGAGGATAAATGTTCACAGCCTTCAGG
CAAACCAGCTTTTTTAGCACGGCAATCTGTATGATATGATCAGCAGGGATGTTCACACTTCACA
GTATAAACCATATTTTCGCTCCTTTAACTTACAAATGTTTCATAATATAATTTAAAATTTCTCA
ATATCTACCTTCTAATTTTGCAAAAAAATCCAACTTTTAATCCCAATTCTAGATACCTGAGGCT
ATTTTATGCAAATAAGGTATTTTGGTGCACCACAGTTTATTATCTTAAAATAGAAGAAATAGAG
ACAATAAGATAATGAGAAAAAAATATATTTGGTTGAATAAACTTAGATAGAAATATAAAATAAA
TCTTTAGAAGGGATTTATGTAATTTTAAAATAAAAAATACAAAAAAAAACATGTCTAATCTATC
TCAATTATTTTCATCTTTTCTATCATTTTTAGCGATTAAACAGTCTCCCGAGAAAGTAATGAAT
GTTGCCATGAAGATTCCACATCAGAAGAATCTCTGTTTTAAAAAATAATAATAATAAGGGATAA
TTATAAAAATTCTCTTATAATTTTATCTGAATTTTACTTTTTCTCTATATTTTCATAAATTATA
TTTTTTATCCTATAGTTTATATGTTTAGTAACAATTTACATCTTTAACAATGGACTTGTTTAAA
AAAGTTTATATGATTCAGTGTAATTTATAAAAATATAAAAAACAAGTAAAATTTAAATAAAAAG
TTTTTGTAATTATTCTTAATAATAATTAATGTCCAAAACTCGCCTGACAAATTGTGGGCTTTTC
TAAATTTGGTAGAGAGGCCCACTGCTGATCAATCGTCCCAAAAGTCAAAACCAATTTCATTTTA
TTTGCAAGCTATGAATGAAGAGTCGGTCATTTGGTCTCTTCCAAGTCCGAGTAAAAAACACTCC
AAATCATCCATCATCCAGAAAACAAGGTAGTCCCTGCAGAGACATAGAGCGTGAGAGATCATGT
CAGGAGGAGGCATAGCTCGTGGTCGTCTTGCTGAAGAGAGAAAGTCATGGCGTAAGAATCATCC
CCACGTAAGTTCTCTTTTCTTCCATTTTTGCCCCTCTTTAGCATCTATTTATCCATCTATCTTG
TCTTCAATTGGGTCTTATTTTTGTGAATTTTCGGTTTAGGGTTTTGTGGCTAAGCCTGATAATG
CACAAGATGGTTCTCTTGATTTGATGGTGTGGAAGTGCATCATACCTGGCAAACCCGGGGTTTG
TAATTTTTTCTATCTCTCTCTGTGGCTTTTTTTTTTTAATTATTATTATAGATTTACACGGTTT
TATTTCTGATTTTCATCAACTGATATGATTTATTTTATTTTTTACTGTAATTAGTCTTGATTAG
CGAAAGGGTAGTTGAGATTGGTGGGATAATATAGGATTAATGACCGTGGATAATAAAAAAAGTT
GAAGTCAACGTATTATTTGGTAGGTGGAAGGCTTATGTGTTAGGAAATTGGTGTCATAGTGTGA
AATTTTGTGAACATTTGTTTTTGTTGCTGCCCGAATAAATAATCTCTTTAGGATGTCTTTGGGT
TTGAAAGAAGTGTTTTCTTGCTCTGGTTCTATAGGAGTATCTCACTCGATTTTTGTTTTGTTTT
TGGTTTACGGGAAGGGGTTTCTTCATATGTGATGGGAGTGGCAATGCCTTGATGGTCCTTTTTG
TATTCCTTCTCATTCCTTTCAAGGCCCCAAGCCGCCAAACTTCGAGCTTAGAAATGCCATTCAT
GTCAGCGTCCCTTTTGGTAATGGACAGTTCTATGCAGCATAAGGCCACTGTACTTTTTAGCATT
TACTACAAGTTTGAAAAATGAATCTTAATATGCCACATTAGAAGTTGATCCTTTTAAAATATTT
TCGAGATCCTCAGAGATTGAGATGTTGTATAGGATTGGAAAATATGTAAGGACCTAAGAAGTGG
GAGATGTTTTGATGTGATAGCTCTTTTATTGTCAATTGGCATTGTTATTCTTTATGAGAGGACC
TGAGTCGATTTTTCTTCTTTAACCCTTTTAAGTTGCATTTGGTGCTCATTTGATTTATCTGCAG
TTTGATATGTATCATTGTTGACCTCTTTACATTATCTTTCCACCCCCTCCTACAAAGAAAGAGA
GAGCCGTTTCTAGTTTCTAGGTTATCAGGAAATGCACATTCATAAAAGTCAGCATTACATGCTG
TTTGCTCAACGATCTCATCTGAATGTTCATGTCCTTAATGTGCACAGACAGATTGGGAGGGTGG
CTTCTTCCCCCTCTCGCTTCATTTCAGTGAGGACTACCCAAGCAAACCTCCAAAGTGCAAGTTC
CCCCAAGGTTTCTTCCACCCTAATGTCTACCCTTCAGGAACTGTGTGCTTATCTATTCTCAATG
AGGACTATGTAAGTAGTTGGCTCACTCTTTCATATTTCACATATTGCAAAACGCCCGGTTTCTA
AAACTATTTTTTCTAGGGCTGGAGACCAGCCATTACTGTGAAGCAAATTTTAGTTGGCATTCAG
GATTTGCTTGATCAACCAAATCCTTCTGATCCTGCGCAAACTGATGGCTATCAGCTTTTTGTCC
AGGTTTTTTATTTCAACATCTCAATCATCAGCTTTGATTTGATTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.104162324
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020