Detail information of BGIOSGA031532_circ_g.7


General Information
CircRNA Name BGIOSGA031532_circ_g.7
ID in PlantcircBase osi_circ_002912
Alias 10:19167135|19167568
Organism Oryza sativa ssp. indica
Position chr10: 19167135-19167568  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031532
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031532_circ_g.5 BGIOSGA031532_circ_g.6 BGIOSGA031532_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031532-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTG
ATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCctgctttggcttcccattttgacctcca
attgatgtcacaataatctgacctgtttctgttccatttgcattaacaataacaccttcagatt
cctataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAAA
GTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATGG
CCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTG
CTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGA
AGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCT
CCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC
Conservation Information
Conserved circRNAs osa_circ_007726* osa_circ_007725
PMCS
Functional Information
Coding potential Y
Potential coding position 19167480-19167137(-)
19167153-19167513(-)
19167498-19167164(+)
Potential amino acid sequence MRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNA
NGTETGQIIVTSIGGQNGKPKQGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHR
DAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTS
IGGQNGKPKQGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNP
GRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQGG
DSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILP
KEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQ(-)
MGSQSRVVILAPKDQNSIRMEQEI*(-)
MWLNDYISCSILIEFWSFGARITTLLWLPILTSN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021