Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_010369
Alias Ath_circ_FC1028
Organism Arabidpsis thaliana
Position chr1: 28502119-28506049  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.3 AT1G75920_circ_g.1 1_circ_ag.2 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.9 AT1G76510_circ_g.10 1_circ_ag.11 AT1G76520_circ_g.1 AT1G76520_circ_g.2 1_circ_ag.3 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 1_circ_ag.4 AT1G76680_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads 86
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCTTATCGTAAGTTATACATTGCTCCAAGCGACCTTAAAACGGGTGTTTCTTTTGCATCAGGT
GGTGCAGGAGTCGACCCTGTTACATCCAAATTGCTGagagttttaacgccaaaggatcaagtaa
acgatttcaaagggtacataagaaagctaaaggccacagcaggtccttcaagagcaagtagtat
agtttcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAGTTTTAACGCCAAAGGATCAAGTAAACGATTTCAAAGGGTACATAAGAAAGCTAAAGGCCA
CAGCAGGTCCTTCAAGAGCAAGTAGTATAGTTTCAAATGCAGTGATTCTTGTTTCTCAAGGAAA
TAATGATATTGGAATCTCATATTTTGGAACTCCAACTGCTGCTTTCCGAGGATTAACTCCCAAT
AGATATACCACTAAACTAGCTGGTTGGAACAAACAGTTTATGAAAGTAATACATAAAATCATTT
TCTTATCAAGCATCCATATATATATATGAAGTATATATATTCGTTCACGTTTTTTTTGTTCTAT
GTATGAAGGAATTATACGATCAAGGAGCGAGAAAATTCGCGGTAATGGGAGTGATACCGTTGGG
ATGTTTGCCTATGACAAGAATCTTCCTTGGTGGGTTCGTCATCACGTGTAACTTCTTCGCGAAT
AGAGTCGCAGAACAGTACAACGGAAAATTGAGGAGCGGAACTAAAAGTTGGGGACGTGAAGCAG
GTTTTAGGGGTGCAAAATTTGTCTATGTCGACATGTACAACACTCTTATGGATGTTATTAAAAA
TTATAGAAGATACGGTAAGTAAATACCCACCACCATTTTCCCTTGTTTTTTTTTGCTAACAACA
TGAATTATATTGGATTTGAATTAGATGGGGATATAATTATAATGACGAAAACTATTGATTTTAT
GTCACATTTAACTGTTCCTCATTCTTAAAGATCTTGTTTACCGAATTTGTTCTATCGCTTGATA
ATTTATGTATATAGTTACTAAGTATCATGTACTTGTATGGTTGCAGGATTTTCTAATGAGAAAA
ATGGGTGTTGTTGTATGATTACGGCTATAATACCATGCCCCAACCCAGATAAATACGTCTTCTA
CGACTTCGTTCATCCATCCGAGAAAGCTTACAGAACAATTTCTAAAAAGCTTGTCCAGGATATC
AAGAATGGCCTTGCCTGATTTATTATATATACAATGCTTTATTTTAATTTTAATAACAGCCATC
GTTAATAATAGAAATGAGAAGACAAAAATCATACATGGCGATCTCTCTGTTTTTCTTATGTTAA
AGAATGTATAATCCAGTTTATGTATTGTTCACTTTATATAATCCCAGAACAACAAAGGAGTTTG
TTTACAAATGTAAACCTTTTCTTTTTTGCCAATGGTTAGAAAAGAACGTATCTAATAACAATCC
CCTAGCAAATAAGAAAATGACCAAATTAACACTTTTGGAAATTAGTGAAATAAAAATCCAATAA
GGTGATTTAAAAACTCATGTTTTTGATGACGATAGCTAAAATTTTATGAATTTAAATATCGTCA
AAATAAAATATCAACTTCACTTATAAGTATTCCGTAAAACATATTGGTTTAATTGTGAACATTT
TTTCATAGAATATGTCCGATATATATATTTCTTCTTCTTCTATATGTGCCAGTCGGGCAAAAAA
AATTGTGAATGGCAAATGAAAAAGGTTATGCATTGTAAACGAATTGCTTCTAGCAAGGTCCGCA
ACCACTATATACAAAATGATGCAAGGGATATTGGAATTTTACTTTTTTATTTATTTAATTTCTA
TTTATTATACACTAGTACATCTGTTCTTCTTAGCCCTGTTCTTTAAAACAATAAGTCAACGTGG
TCCAGTAATACAAAGGAGGCAGAGCACAACGTTAGATAAATGAAAAGCAATGGTTTAGTAGAAA
GTAATACAATCAAAATATATACAATCAGTATCTAAACTAAAAATTAGTAGGAGCGTATCAGCTA
ATAATTGGAAAGTATTTGACCCGAACCGTGTATAACGGCTAGATTATCACCGAACCTAAGGTTA
GTGTTTGCTCTGGACTATAACAAACCCTAAGTGAAAAGGAAAAAAGGAAACTTGAGTGTCAAAC
AAAAAAATTTATATACATGCGTCTCGCGTCTCCTTTCAAGTTAAAAATGCAATTGCTCTGAATT
TTTTTTCAATTCTCTTCTTCGATTGTTGTCTGCTTCGTTTGCCTCTCTGTTCTCTTCTTCTTCC
TTTTTTGAGATTTCATTATTCATGAGTTGTTGCATCTGCTTGTTGGATTCACCCTAATCTTTGG
TGTGATTCGTTGGTATGGCCCAAGAAAGACTCATATATACAACGGCTCTCTCTGTTTTCACTTA
AAAAGCAACGAAGAAGACGAGAGAGATCACACACACAAGCATCACATCTTAATTTGTTTGCCTG
CGATGATAAGATCTATCATCCACCGTAGAAACAGAGACATAGAGAGAGACGATTCGAAGGACAT
GTTGCCGGGATTTTAGGCTTCGTGAGTCATGATGTTGGAGGTTCTATCCGGCGATGGGGGTGTC
GATAGATTGAGGAGGTGGAGCGATCAGAGGATTTTAGGCTTCGGGAGTCATGATGGTGGAGCGA
TCATCGGAGATTGGCGATGGAGATTGAGGAGGCGGAGCGTATTTTCCGTTAACGGGTATAGATG
GCATGTGCTCTCAGAGGCCCAATAGAAACAATTTCAGCCCATCAAACAATGACTAGCCCATTGC
CAGGTTAATTCTCAGCCCATTTTCTTGTTTAGTTAAGAAATTAATATATTTTATAATTTTAATT
AAAGGCTTTTTTCTCACGGATTTTTTATTTTCTTGCAATTTTTATTTAAAGTTAATTTTTAATA
TTTTTAGATTAAAAAAATTATTTTTTAATATATATAATATTTTTGTTTTTAAGTGTTAAAGTTT
AATATGTGTAAAATAATTGGACACAACATCCCGTCCATAATATGAGGTCCTTAAGCGGTGTTCT
AGGTTCATTAAATATTTTATACATACAAAATTTTAACATTTTTAAAAAAGTATTTTTTGGGTTT
TCAGTATGTATTATTTTTTAAATATACATAAAGTTTTAATTTAAGTGTTAGATTTAAATATGTG
TAAACCAAAAAGAATGTAAATAATACATGTAATATAGACATAACTCTTTTTACTAACTTTCAAA
ACCATACTTTATATAATAAAATTGATTTTTGATTTACCAAATCAATAAAGGTACATGTACAACC
AATTACTCTTTTTTTTTTCTTTTTGAAACAAATTAATGGTAATAAGATCAATGGTTTACTTAAC
TTAATAGAACTTTTCTTTTTCATAAATTTTATATTTACATGATATTCTTAATAGATGAGCCATG
ACTTTTATATAGCAATAATAAGATGCACTAAAACATAGTGATAATATTATTTTAGCATTTTTTA
AATGAGAGTGATAGAATTATTATCCTCTTAAAAGCTAAATTCTAACATTCATTTTGTGTATGTT
AACTCTCATGCTTTTTGCCTTGGACAAACAAAAGCTAGACGTCTAAAAATAGTTAGAAAATAAA
ACATATATAAGATGAACTAAACACTTTGGGGGAAAAAAAAATTATGAACTTAATTAGGGTTCTA
TATGTTTAGAAAAAAAATGTTGGTGTTAGCATTATTTTCCATTTACTTCTTATCAATAGAAGCT
GTCCGGAATGAATCATTTCCTGCGCTATTAGCTTTTGGAGATTCAATGGTCGATACTGGTAACA
ACAATTACCTCCTGACTCTAATGAAAGGAAATTACTGGCCATATGGGTGGAATTTCGACTCAAA
AATACCGACCGGAAGATTTGGAAACGGAAGAGTTTTCTCCGATGTAGTTGGTATAATATTAAAG
AGTTCTTTACAATGCTTTTTTGTAATTTCTGGTTTATATCATATTGTTTGGCTAATCATATAGT
GAAGTTCTTTTTTTCCAACCGCAGCTGAAGGTTTGGGGATCAAAAGAATTGTACCAGCTTATCG
TAAGTTATACATTGCTCCAAGCGACCTTAAAACGGGTGTTTCTTTTGCATCAGGTGGTGCAGGA
GTCGACCCTGTTACATCCAAATTGCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.304559007
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a