Detail information of 1_circ_ag.4


General Information
CircRNA Name 1_circ_ag.4
ID in PlantcircBase ath_circ_010517
Alias NA
Organism Arabidpsis thaliana
Position chr1: 28777013-28779012  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 1_circ_ag.3 AT1G75920_circ_g.1 1_circ_ag.2 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.9 AT1G76510_circ_g.10 1_circ_ag.11 AT1G76520_circ_g.1 AT1G76520_circ_g.2 1_circ_ag.3 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 AT1G76680_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads 5
Tissues aerial, whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCAATCTTGAAAAGTGTTTTTGAGAGAAATATAGGTTTTACAAAATCCACCGTTGTGAATTCA
TGGAAATGGTAAACGCAGAAGCAAAACAGAGTGTCCctcttctcactccctataagatgggaag
attcaatctttcccatagggttgttctagcaccattgacgagacagagatcgtacggaaacgtt
cctcagcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTCTCACTCCCTATAAGATGGGAAGATTCAATCTTTCCCATAGGGTTGTTCTAGCACCATT
GACGAGACAGAGATCGTACGGAAACGTTCCTCAGCCTCACGCTGCCATATATTACTCTCAGAGA
ACGACTCCAGGAGGTTTTCTCATCACTGAAGCCACTGGAGTTTCAGATACAGCTCAAGGGTAAC
TCAAAAACCCTTCCTTTTGATTAAAGTTTACGTTTTTATTTGTGGGTTTTTGATCTGATCCTTA
CCACATGTGTGTGATTTGATCTTGAAGATATCAAGATACTCCTGGGATATGGACTAAAGAGCAT
GTGGAGGCATGGAAGCCAATCGTTGATGCTGTACATGCCAAAGGTGGTATCTTCTTCTGTCAGA
TCTGGCATGTTGGCCGCGTTTCTAATAGCGGGTTTCAGCCAAATGGAAAAGCTCCTATCTCTTG
TTCGGATAAGCCATTGATGCCTCAAATTCGCTCTAATGGCATCGATGAAGCTCTCTTTACCCCT
CCAAGACGGCTTGGTATCGAAGAAATCCCCGGCATTGTCAATGATTTTAGGCTTGCTGCAAGAA
ATGCTATGGAAGCTGGTAAGCACATTTTGGATTTGGAATTCAAGAAGCTGAAACCATTCAAGAT
TCTTATATGTGTCCTTGTTGTTGCAGGTTTTGATGGAGTTGAGATTCATGGAGCTAATGGCTAT
CTGATTGACCAGTTCATGAAGGATACGGTGAATGATAGAACTGATGAATACGGTGGATCATTGC
AAAACCGTTGCAAATTTCCTCTAGAAATAGTCGATGCAGTTGCTAAGGAGATCGGACCAGACCG
TGTTGGAATCAGGCTCTCTCCATTTGCTGACTACATGGAATCTGGAGACACTAATCCAGGAGCA
TTAGGGCTTTATATGGCGGAATCTTTGAACAAATACGGAATCCTCTACTGTCATGTGATTGAAG
CGAGAATGAAAACAATGGGAGAAGTACATGCTTGTCCTCACACACTAATGCCGATGAGGAAAGC
GTTTAAGGGGACTTTTATCTCCGCAGGAGGTTTCACGAGGGAAGATGGGAATGAGGCTGTGTCA
AAGGGAAGAACTGATTTGGTGGCTTATGGTCGATGGTTTCTAGCCAACCCGGACCTGCCAAAGA
GGTTCCAAGTGGATGCACCGCTGAATAAGTACGATAGACCAACGTTTTACACTTCTGATCCAGT
CGTCGGTTACACCGATTACCCTTTCCTCGAATCAACAGCTTAAAATTGTTATCAATAATGTAAT
GTAGTGTGTTTCCCTTATATAAGATGTAATAAGTTTCTGGCTTTTCATTTATACTTTTTAAGTT
TAAGTCATAAAACCTTCACAAAAATTTCCACGGACACATTATCACAAAAGCGCTTTCTAGAGAC
CAACATAACTTAACTTGATTGTTGATTTCTGTTTGATGTGATCATGCCGCAATCCAGTGTGTTC
TCATGATGCTATCTTCCCTCCTTTCACATGCTGCACAGAACAAAACAGAGCATTTTCCTCCCAA
CTATACCTAATTTTTTTTGGTCGGTGGTCAAAGTTATACATCGGAAGAATCTGTTGAAATCATA
TTGAGGCCCCTCATTTGTTATGTTATGTAATCTCCAATGGATCAAAAGTAGAATCCCAACTGTA
GAAGATGATACTATCATGCTAGGTAGAAGACAGCATGGAATATGGGGTAAGTTCAAAGTGGTTA
CACTCTAATGTCGTCTCAACGAATACGTCTTTATGAAGAAATAAAAAAATCTAAGTGGTTGGAT
GCGTCATCAATGACGACCACGTCGTTAAAGACAGAAAGAAACACTTGCGTTCCTGATTCTCTGA
TCAATCAATGTGTATAAATATGTTCGGATATGTCCATTATCTTACGCAATCTTGAAAAGTGTTT
TTGAGAGAAATATAGGTTTTACAAAATCCACCGTTGTGAATTCATGGAAATGGTAAACGCAGAA
GCAAAACAGAGTGTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.360931484
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017