Detail information of BGIOSGA032547_circ_g.9


General Information
CircRNA Name BGIOSGA032547_circ_g.9
ID in PlantcircBase osi_circ_008794
Alias Chr10:3670612_3673298(MH63RS2), Chr10:3916276_3918963(ZS97RS2), Chr10:3670612_3673298(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3050793-3053480  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.6 BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.8 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.11 BGIOSGA032547_circ_g.12 BGIOSGA032547_circ_g.13 BGIOSGA032547_circ_g.14 BGIOSGA032547_circ_g.15 BGIOSGA032547_circ_g.16
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA032547-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCAGCTATTGTCATGATCTTAAGGATATTGAAGATATACAGCTTGTCCTTTGCTGTGGATTT
GATATTGTATTTTATATGCTGTCCAACTTACCAGAGgtttccacattcaggtgtcctctttttg
cttgtaattttggcacaagatcttcatgcatgcaattacgaggaagcttgtgctataatggacc
tactatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCCACATTCAGGTGTCCTCTTTTTGCTTGTAATTTTGGCACAAGATCTTCATGCATGCAAT
TACGAGGAAGCTTGTGCTATAATGGACCTACTATATAAGATGGTATCATCAAACAGGGTACTGA
TCCTTTATTTTTCACCCTACATCTTGAATTGCTTGTTTCTAAATCTGTTTCTTGACGATGAACT
AAGTTACTTACCCCTTCTTTTGATAAAATTCCACCTTAACAAATGGGATCTTCATTTGTTTTTC
ATGCTGTTGAATATATTGCAGTTTTTAGTGCTGTATTCCACAACCTTATCTCCATTTAATTTTG
AGCCTTGAATATGCATAGTTTACTTTCTGTAGGATTTGTGCCTTGCTTTGCTGCATGCTGACAA
GTCGCTAGCTGTCCAAGCGTCACAGAACTTGGGGTATATTGACAAGCATGTCAGGTTTGAAACT
TTTGTCTTTTAGAGAATATGGGTCTGAAACATTTATTCACGCTGAATACATCCCTTGGAATGAG
AATAATATATTATATTTTTCCCTTCTCAGGATTGATATTGCTAAAATTTTTTGCACATCCATTT
TCAAATATGTGGAAGATTTTAATAATGCTTGTGTAATGTCCAAAACCCTTGGCATGCTGGCAGA
AATGCTCAGTTGGTAAGCTGATTTGCCTCTTGGTTTGTTTCTGTTTTGAATAAGTAGTGTTGAA
GTATTCCTTTTCTTCTATTAAAGCCTTGACTATCTGTTTGTTGTAAATTATTTTGGCTAAGGAG
TTTGTCTTTTCAGTGTTCCATACCATGTGTTCAATGTGGCGTTGGACTGTGGCTTCTTCATTAC
ACAATCTGGTGGTGCTTCAAGGTAATCTAGTGTACGGGAATTGGTAAATAGGCTAATATACCTT
TTCTTTTCCTCGAATGCGCAGGAGAATTGCGCACCATTATATTAACAAGAAGGAAAAAAAGTCC
AAAAGGAAAATAGGCTAATATACCTTGTTTTTTGCTGTATACAACCGTTTATTGGTACATTATT
TATGTATTCTGAAACAAAAGTTGTTCTATATTTCCAACTATCATCAATATTTGAATTTTTCAAA
GTCAATAGTTCACTGCTTCTTAATTATGTATGGATCACCTTTTTAAGTTCAATTATTGGGATGA
CCATGGTCATGATGGTCATACTTTCATGCATAGTGTAATTTTTTTTAACACCCTTTTACAGTGA
GTTAAATGGGCTTTCGGGCATTTTGAACTAAACTATCATTGTCTGCTGTACTTGTAAACATTGT
TTCACCATACGAGCCCAAGCTGATCATGCAGAAAAAGTTTCTTAATTAAAGTCAGTGACATTGA
CCATACTCAACTAATGCCTTTGTTGAATGGCATACTGCAACCGATCAACCTGTTCACTACATGA
CTGCAAGGGGAAATAGTGGTCATTTTGAAATAACTTTCACTACATGACTGCAAGGGTAAATAGT
GGTCATTTTGAAACAGCTATACTCTTGGTTTCCTCAAGGAACTTGCATTGTGAAACATCTGTAA
AGAAAATTAACTTTCATGGTGAAATGGCTTGGAGTAAACTAATCTTAAAAAGTTCCAAGTCTGT
TTAGTTCTTATGTATTTCCAGCTGCTGTGGTTTTTTCTGCATGAAACTGTAGATATGAGAAAAA
AACAAAAAAGTGAAAACTACAGTTTTCTCTGCAGTGATTGGCTTCTTTCTGGTGCGCTAGCAAG
AATGCTTTTTGCTACCTCTGAGGATAGTGGAGACTGTTCTTCACTTACAACTACAGGTATGCAA
TCTTGCTATCTCTGAAGTTATAAATGGGTTTCTAATATTTTTTATTAAATTTATGTGAGATTTC
TTCTCTGTTAATTAATTATGCAGTGCTCACTGCTCAGCATCTGCTTTCCTATATGCATTATATA
TTCATAATTATTTTCTGTACATATGATGATCTGATGATTTGCTATATTTTTTTAGTGCTTGATT
TTGCCATCCAGGTTTTGCGGAAAGGAGCTGCTGCTGATGATATAATATCATCATTCATTATATT
TTCAGTTCAATACATCATGGTTAATCATATGAACTGGAAATACAAGAGTTATAGTCGCTGGAAG
ATAACCCTTAAGGTACATATATTTTTAATTTGTTTGATTGTTTGTGAGGTGACCACTTTATTTG
TTAGGTCTCATTGACTTCACATGGTTTTGCCTCCTTTTTGTTGGTCCAAGTCAATGGTTTGGAA
AATAAATTATGTTTCACTTAATTTGTTCAAGAGATAGTGTTAAGATTCTTTTTTCATTAGTTCT
ATTCATGAATGAGAAAATAAGAACGGACCATTTCAATGTGATTTCAAGGTGTTTGATTTGGTAA
AGAGCTGTATTCAAGTCAAATCATTCTCATCAAAGCTTGGTGGCATCATTTGGGAAATTCTATT
GTATGATTCTTCTATCCACAGTGTTCTTTTGCATATTTTGTCCATGTCAACGCAATTACTGGAA
GTAAGCTTTCTTTCCTTGAGCAATTATGTTATACATGATTTAGCTTCATTGCCTTTTCTGTGAC
AAACTGTTAAAATTTTTCAGCACTCGCATGGCAGCTATTGTCATGATCTTAAGGATATTGAAGA
TATACAGCTTGTCCTTTGCTGTGGATTTGATATTGTATTTTATATGCTGTCCAACTTACCAGAG
Conservation Information
Conserved circRNAs osa_circ_006239
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021