Detail information of BGIOSGA032547_circ_g.8


General Information
CircRNA Name BGIOSGA032547_circ_g.8
ID in PlantcircBase osi_circ_002741
Alias 10:3048892|3053480
Organism Oryza sativa ssp. indica
Position chr10: 3048892-3053480  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.6 BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.9 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.11 BGIOSGA032547_circ_g.12 BGIOSGA032547_circ_g.13 BGIOSGA032547_circ_g.14 BGIOSGA032547_circ_g.15 BGIOSGA032547_circ_g.16
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA032547-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCAGCTATTGTCATGATCTTAAGGATATTGAAGATATACAGCTTGTCCTTTGCTGTGGATTT
GATATTGTATTTTATATGCTGTCCAACTTACCAGAGatttaattaccttgagaggatgaatggg
gtgactacgttgtatgcagtccctaggagtgatacagacaatgtgaactaccatgatcaaattg
aaattcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTAATTACCTTGAGAGGATGAATGGGGTGACTACGTTGTATGCAGTCCCTAGGAGTGATACA
GACAATGTGAACTACCATGATCAAATTGAAATTCATAGTCCAATCAGCATTTTTGGTATTGAAG
GAACTACAATTCCCGGTGGAAGCCATGGCTACATCTTGAAAGTTCTTGAAGATGATGTTGCATT
AGTTCGCTGGGAGGTAAAATACCTTCTCTATTCTACTTACCTGATATTCTTTCTTTTTCCGATA
GAAAAAATGTTAGCAAGGCATTCTTGTCTAACGAAATCAGTTGCATGTTTTGTTTCATTGTGCC
CTGTGTTTAATTATAATGATGTAAACACCATAGAGAAGGAACTGGTAGTGATGACTGAAAATAG
AAGGGAAAAGTTTATTCTACTCCCTTGAACTTTTTTTGACACAGAACTTTACCCCTAGATTTCA
GCTCACTTTACCCCCCCCCTCTCTGAAAACAGTTCACTTAACTGCCTAATGACATTTTTCTTTG
TTATTACTCTGTAAGTTGTGTTTTACTTTGATATTTTGTGGGATGATACATAGCATTGTACCTT
ACTCCCTCCGTCCCAAAATAAACAAACCTAGGATTGGATGGGACATAACCTAACCTGCCCAGAT
TCGTTGTACTAGGTTATGTCCCATCCTATCCTAGTTTTTTTTTATTTTGGGACGGAGGGAGTAT
GTCTTAACTTTTTTAAAAAAAAATTAAGCCACTATTTGCATTGGTTGGGAGAGATTTAAAACTG
TATACAAACTGCTATGGAAAAAATGAACTTATTTTTTTAACATACTTTACGTTGTCATCTATGG
CTCTAAAAAATTTTAGCTTAAAACATGCTTTATTATGGAGAAAAAAACAAAACAGATTGCCATT
ATGGAGTAAACTGAGCCATTTTTTAGTAGTTCAGTGGTGGGTTTTGAAATTTGCTGGAAAAATA
GTTCACTTGTTAAGTGGTCTGGAGAATAGTCCGAGGGAGTAAAATGGACCTTTTCCAAGATTGG
TTAGTGGTTAGACAAGATAGTGCAACTGCGCAAGGTAGATAGATTTTTGTTAAGCTAGTTCACC
TTGCCTAGGATGAGTAATAGATTTGGGAGAAATATCGGTGATTTTTTTATGTATTGCGTGATAA
TTGAACAAATAAGCCCTGACAACTGATGGATTAAGTGTTAACAAATAAGCTAATTTTGTATTTT
ACCGAAGACACATAATAGGAACCAAATCAATCCTAAGAAATAGCTTCCTACCTAACCATCCGAT
TGTAGCTAGAGAGTACTATAAGATTGATGTTCCAGCCTATATGACATTTTGTATGTAGGATTAC
CCAAAGCCTTGTAATACCGATTCATCATCACAATAAGTATTGGATTTTTCTTCAAAAGATAGAA
GTAAACTCCATGACGAGGCTGATGTTTTATGGCAGGATATGTCTTGCATATAGTGTCAATCTTA
GCTCAATGTTTCATCAAACAAAAACAATTAATAGGAACTCATACATTTGATCTTGAAAGAGGGG
ACTAGCACATGTAGAGACCACAAGGATCAACAAAGAGATGAATCGCCTCAACAATTCGCCAGTA
TATATGTACTTGCTAGTTTCATAATTTTTGTCTTCTATAGAAATGAAAGCCTAGCCGTATACAT
GAATAACTATAGTACAACTGCAATATAGTAATAATATATAATACTAGGATGTATAGATTGAAAT
CAGGGAAGGCGTGCCCAATTTGAACTACTTTAAATGTATGTGTCCCTGGTCTGTACTTGGTTTT
GTTGTACCTTGAGAAGCAAAAATCTTTCATAACTGCCATAGTGCTTAATTTTTTTAATGGATGT
ACTGAATTGTTTATCTGACATGAGCTGCTGGCTCATTTTTATCTAGTTTCCACATTCAGGTGTC
CTCTTTTTGCTTGTAATTTTGGCACAAGATCTTCATGCATGCAATTACGAGGAAGCTTGTGCTA
TAATGGACCTACTATATAAGATGGTATCATCAAACAGGGTACTGATCCTTTATTTTTCACCCTA
CATCTTGAATTGCTTGTTTCTAAATCTGTTTCTTGACGATGAACTAAGTTACTTACCCCTTCTT
TTGATAAAATTCCACCTTAACAAATGGGATCTTCATTTGTTTTTCATGCTGTTGAATATATTGC
AGTTTTTAGTGCTGTATTCCACAACCTTATCTCCATTTAATTTTGAGCCTTGAATATGCATAGT
TTACTTTCTGTAGGATTTGTGCCTTGCTTTGCTGCATGCTGACAAGTCGCTAGCTGTCCAAGCG
TCACAGAACTTGGGGTATATTGACAAGCATGTCAGGTTTGAAACTTTTGTCTTTTAGAGAATAT
GGGTCTGAAACATTTATTCACGCTGAATACATCCCTTGGAATGAGAATAATATATTATATTTTT
CCCTTCTCAGGATTGATATTGCTAAAATTTTTTGCACATCCATTTTCAAATATGTGGAAGATTT
TAATAATGCTTGTGTAATGTCCAAAACCCTTGGCATGCTGGCAGAAATGCTCAGTTGGTAAGCT
GATTTGCCTCTTGGTTTGTTTCTGTTTTGAATAAGTAGTGTTGAAGTATTCCTTTTCTTCTATT
AAAGCCTTGACTATCTGTTTGTTGTAAATTATTTTGGCTAAGGAGTTTGTCTTTTCAGTGTTCC
ATACCATGTGTTCAATGTGGCGTTGGACTGTGGCTTCTTCATTACACAATCTGGTGGTGCTTCA
AGGTAATCTAGTGTACGGGAATTGGTAAATAGGCTAATATACCTTTTCTTTTCCTCGAATGCGC
AGGAGAATTGCGCACCATTATATTAACAAGAAGGAAAAAAAGTCCAAAAGGAAAATAGGCTAAT
ATACCTTGTTTTTTGCTGTATACAACCGTTTATTGGTACATTATTTATGTATTCTGAAACAAAA
GTTGTTCTATATTTCCAACTATCATCAATATTTGAATTTTTCAAAGTCAATAGTTCACTGCTTC
TTAATTATGTATGGATCACCTTTTTAAGTTCAATTATTGGGATGACCATGGTCATGATGGTCAT
ACTTTCATGCATAGTGTAATTTTTTTTAACACCCTTTTACAGTGAGTTAAATGGGCTTTCGGGC
ATTTTGAACTAAACTATCATTGTCTGCTGTACTTGTAAACATTGTTTCACCATACGAGCCCAAG
CTGATCATGCAGAAAAAGTTTCTTAATTAAAGTCAGTGACATTGACCATACTCAACTAATGCCT
TTGTTGAATGGCATACTGCAACCGATCAACCTGTTCACTACATGACTGCAAGGGGAAATAGTGG
TCATTTTGAAATAACTTTCACTACATGACTGCAAGGGTAAATAGTGGTCATTTTGAAACAGCTA
TACTCTTGGTTTCCTCAAGGAACTTGCATTGTGAAACATCTGTAAAGAAAATTAACTTTCATGG
TGAAATGGCTTGGAGTAAACTAATCTTAAAAAGTTCCAAGTCTGTTTAGTTCTTATGTATTTCC
AGCTGCTGTGGTTTTTTCTGCATGAAACTGTAGATATGAGAAAAAAACAAAAAAGTGAAAACTA
CAGTTTTCTCTGCAGTGATTGGCTTCTTTCTGGTGCGCTAGCAAGAATGCTTTTTGCTACCTCT
GAGGATAGTGGAGACTGTTCTTCACTTACAACTACAGGTATGCAATCTTGCTATCTCTGAAGTT
ATAAATGGGTTTCTAATATTTTTTATTAAATTTATGTGAGATTTCTTCTCTGTTAATTAATTAT
GCAGTGCTCACTGCTCAGCATCTGCTTTCCTATATGCATTATATATTCATAATTATTTTCTGTA
CATATGATGATCTGATGATTTGCTATATTTTTTTAGTGCTTGATTTTGCCATCCAGGTTTTGCG
GAAAGGAGCTGCTGCTGATGATATAATATCATCATTCATTATATTTTCAGTTCAATACATCATG
GTTAATCATATGAACTGGAAATACAAGAGTTATAGTCGCTGGAAGATAACCCTTAAGGTACATA
TATTTTTAATTTGTTTGATTGTTTGTGAGGTGACCACTTTATTTGTTAGGTCTCATTGACTTCA
CATGGTTTTGCCTCCTTTTTGTTGGTCCAAGTCAATGGTTTGGAAAATAAATTATGTTTCACTT
AATTTGTTCAAGAGATAGTGTTAAGATTCTTTTTTCATTAGTTCTATTCATGAATGAGAAAATA
AGAACGGACCATTTCAATGTGATTTCAAGGTGTTTGATTTGGTAAAGAGCTGTATTCAAGTCAA
ATCATTCTCATCAAAGCTTGGTGGCATCATTTGGGAAATTCTATTGTATGATTCTTCTATCCAC
AGTGTTCTTTTGCATATTTTGTCCATGTCAACGCAATTACTGGAAGTAAGCTTTCTTTCCTTGA
GCAATTATGTTATACATGATTTAGCTTCATTGCCTTTTCTGTGACAAACTGTTAAAATTTTTCA
GCACTCGCATGGCAGCTATTGTCATGATCTTAAGGATATTGAAGATATACAGCTTGTCCTTTGC
TGTGGATTTGATATTGTATTTTATATGCTGTCCAACTTACCAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 3049047-3053403(-)
3048912-3048894(+)
3053228-3048894(+)
Potential amino acid sequence MASTGNCSSFNTKNADWTMNFNLIMVVHIVCITPRDCIQRSHPIHPLKVIKSLVSWTAYKIQYQ
IHSKGQAVYLQYP*(-)
MNGVTTLYAVPRSDTDNVNYHDQIEIHSPISIFGIEGTTIPGGSHGYILKVLEDDVALVRWEDL
CLALLHADKSLAVQASQNLGYIDKHVRIDIAKIFCTSIFKYVEDFNNACVMSKTLGMLAEMLSC
VPYHVFNVALDCGFFITQSGGASSDWLLSGALARMLFATSEDSGDCSSLTTTVLDFAIQVLRKG
AAADDIISSFIIFSVQYIMVNHMNWKYKSYSRWKITLKVFDLVKSCIQVKSFSSKLGGIIWEIL
LYDSSIHSVLLHILSMSTQLLEHSHGSYCHDLKDIEDIQLVLCCGFDIVFYMLSNLPEI*(+)
MILLSTVFFCIFCPCQRNYWNTRMAAIVMILRILKIYSLSFAVDLILYFICCPTYQRFNYLERM
NGVTTLYAVPRSDTDNVNYHDQIEIHSPISIFGIEGTTIPGGSHGYILKVLEDDVALVRWEDLC
LALLHADKSLAVQASQNLGYIDKHVRIDIAKIFCTSIFKYVEDFNNACVMSKTLGMLAEMLSCV
PYHVFNVALDCGFFITQSGGASSDWLLSGALARMLFATSEDSGDCSSLTTTVLDFAIQVLRKGA
AADDIISSFIIFSVQYIMVNHMNWKYKSYSRWKITLKVFDLVKSCIQVKSFSSKLGGIIWEILL
YDSSIHSVLLHILSMSTQLLEHSHGSYCHDLKDIEDIQLVLCCGFDIVFYMLSNLPEI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021