Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | BGIOSGA032547_circ_g.8 |
ID in PlantcircBase | osi_circ_002741 |
Alias | 10:3048892|3053480 |
Organism | Oryza sativa ssp. indica |
Position | chr10: 3048892-3053480 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA032547 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA032547_circ_g.6 BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.9 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.11 BGIOSGA032547_circ_g.12 BGIOSGA032547_circ_g.13 BGIOSGA032547_circ_g.14 BGIOSGA032547_circ_g.15 BGIOSGA032547_circ_g.16 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA032547-TA:8 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
3049047-3053403(-) 3048912-3048894(+) 3053228-3048894(+) |
Potential amino acid sequence |
MASTGNCSSFNTKNADWTMNFNLIMVVHIVCITPRDCIQRSHPIHPLKVIKSLVSWTAYKIQYQ IHSKGQAVYLQYP*(-) MNGVTTLYAVPRSDTDNVNYHDQIEIHSPISIFGIEGTTIPGGSHGYILKVLEDDVALVRWEDL CLALLHADKSLAVQASQNLGYIDKHVRIDIAKIFCTSIFKYVEDFNNACVMSKTLGMLAEMLSC VPYHVFNVALDCGFFITQSGGASSDWLLSGALARMLFATSEDSGDCSSLTTTVLDFAIQVLRKG AAADDIISSFIIFSVQYIMVNHMNWKYKSYSRWKITLKVFDLVKSCIQVKSFSSKLGGIIWEIL LYDSSIHSVLLHILSMSTQLLEHSHGSYCHDLKDIEDIQLVLCCGFDIVFYMLSNLPEI*(+) MILLSTVFFCIFCPCQRNYWNTRMAAIVMILRILKIYSLSFAVDLILYFICCPTYQRFNYLERM NGVTTLYAVPRSDTDNVNYHDQIEIHSPISIFGIEGTTIPGGSHGYILKVLEDDVALVRWEDLC LALLHADKSLAVQASQNLGYIDKHVRIDIAKIFCTSIFKYVEDFNNACVMSKTLGMLAEMLSCV PYHVFNVALDCGFFITQSGGASSDWLLSGALARMLFATSEDSGDCSSLTTTVLDFAIQVLRKGA AADDIISSFIIFSVQYIMVNHMNWKYKSYSRWKITLKVFDLVKSCIQVKSFSSKLGGIIWEILL YDSSIHSVLLHILSMSTQLLEHSHGSYCHDLKDIEDIQLVLCCGFDIVFYMLSNLPEI*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Huang et al., 2021 |