Detail information of BGIOSGA032547_circ_g.6


General Information
CircRNA Name BGIOSGA032547_circ_g.6
ID in PlantcircBase osi_circ_008792
Alias Chr10:3914374_3918399(ZS97RS2), Chr10:3668712_3672734(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3048891-3052916  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.8 BGIOSGA032547_circ_g.9 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.11 BGIOSGA032547_circ_g.12 BGIOSGA032547_circ_g.13 BGIOSGA032547_circ_g.14 BGIOSGA032547_circ_g.15 BGIOSGA032547_circ_g.16
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA032547-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATAATATCATCATTCATTATATTTTCAGTTCAATACATCATGGTTAATCATATGAACTGGAAA
TACAAGAGTTATAGTCGCTGGAAGATAACCCTTAAGgatttaattaccttgagaggatgaatgg
ggtgactacgttgtatgcagtccctaggagtgatacagacaatgtgaactaccatgatcaaatt
gaaattca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTTAATTACCTTGAGAGGATGAATGGGGTGACTACGTTGTATGCAGTCCCTAGGAGTGATAC
AGACAATGTGAACTACCATGATCAAATTGAAATTCATAGTCCAATCAGCATTTTTGGTATTGAA
GGAACTACAATTCCCGGTGGAAGCCATGGCTACATCTTGAAAGTTCTTGAAGATGATGTTGCAT
TAGTTCGCTGGGAGGTAAAATACCTTCTCTATTCTACTTACCTGATATTCTTTCTTTTTCCGAT
AGAAAAAATGTTAGCAAGGCATTCTTGTCTAACGAAATCAGTTGCATGTTTTGTTTCATTGTGC
CCTGTGTTTAATTATAATGATGTAAACACCATAGAGAAGGAACTGGTAGTGATGACTGAAAATA
GAAGGGAAAAGTTTATTCTACTCCCTTGAACTTTTTTTGACACAGAACTTTACCCCTAGATTTC
AGCTCACTTTACCCCCCCCCTCTCTGAAAACAGTTCACTTAACTGCCTAATGACATTTTTCTTT
GTTATTACTCTGTAAGTTGTGTTTTACTTTGATATTTTGTGGGATGATACATAGCATTGTACCT
TACTCCCTCCGTCCCAAAATAAACAAACCTAGGATTGGATGGGACATAACCTAACCTGCCCAGA
TTCGTTGTACTAGGTTATGTCCCATCCTATCCTAGTTTTTTTTTATTTTGGGACGGAGGGAGTA
TGTCTTAACTTTTTTAAAAAAAAATTAAGCCACTATTTGCATTGGTTGGGAGAGATTTAAAACT
GTATACAAACTGCTATGGAAAAAATGAACTTATTTTTTTAACATACTTTACGTTGTCATCTATG
GCTCTAAAAAATTTTAGCTTAAAACATGCTTTATTATGGAGAAAAAAACAAAACAGATTGCCAT
TATGGAGTAAACTGAGCCATTTTTTAGTAGTTCAGTGGTGGGTTTTGAAATTTGCTGGAAAAAT
AGTTCACTTGTTAAGTGGTCTGGAGAATAGTCCGAGGGAGTAAAATGGACCTTTTCCAAGATTG
GTTAGTGGTTAGACAAGATAGTGCAACTGCGCAAGGTAGATAGATTTTTGTTAAGCTAGTTCAC
CTTGCCTAGGATGAGTAATAGATTTGGGAGAAATATCGGTGATTTTTTTATGTATTGCGTGATA
ATTGAACAAATAAGCCCTGACAACTGATGGATTAAGTGTTAACAAATAAGCTAATTTTGTATTT
TACCGAAGACACATAATAGGAACCAAATCAATCCTAAGAAATAGCTTCCTACCTAACCATCCGA
TTGTAGCTAGAGAGTACTATAAGATTGATGTTCCAGCCTATATGACATTTTGTATGTAGGATTA
CCCAAAGCCTTGTAATACCGATTCATCATCACAATAAGTATTGGATTTTTCTTCAAAAGATAGA
AGTAAACTCCATGACGAGGCTGATGTTTTATGGCAGGATATGTCTTGCATATAGTGTCAATCTT
AGCTCAATGTTTCATCAAACAAAAACAATTAATAGGAACTCATACATTTGATCTTGAAAGAGGG
GACTAGCACATGTAGAGACCACAAGGATCAACAAAGAGATGAATCGCCTCAACAATTCGCCAGT
ATATATGTACTTGCTAGTTTCATAATTTTTGTCTTCTATAGAAATGAAAGCCTAGCCGTATACA
TGAATAACTATAGTACAACTGCAATATAGTAATAATATATAATACTAGGATGTATAGATTGAAA
TCAGGGAAGGCGTGCCCAATTTGAACTACTTTAAATGTATGTGTCCCTGGTCTGTACTTGGTTT
TGTTGTACCTTGAGAAGCAAAAATCTTTCATAACTGCCATAGTGCTTAATTTTTTTAATGGATG
TACTGAATTGTTTATCTGACATGAGCTGCTGGCTCATTTTTATCTAGTTTCCACATTCAGGTGT
CCTCTTTTTGCTTGTAATTTTGGCACAAGATCTTCATGCATGCAATTACGAGGAAGCTTGTGCT
ATAATGGACCTACTATATAAGATGGTATCATCAAACAGGGTACTGATCCTTTATTTTTCACCCT
ACATCTTGAATTGCTTGTTTCTAAATCTGTTTCTTGACGATGAACTAAGTTACTTACCCCTTCT
TTTGATAAAATTCCACCTTAACAAATGGGATCTTCATTTGTTTTTCATGCTGTTGAATATATTG
CAGTTTTTAGTGCTGTATTCCACAACCTTATCTCCATTTAATTTTGAGCCTTGAATATGCATAG
TTTACTTTCTGTAGGATTTGTGCCTTGCTTTGCTGCATGCTGACAAGTCGCTAGCTGTCCAAGC
GTCACAGAACTTGGGGTATATTGACAAGCATGTCAGGTTTGAAACTTTTGTCTTTTAGAGAATA
TGGGTCTGAAACATTTATTCACGCTGAATACATCCCTTGGAATGAGAATAATATATTATATTTT
TCCCTTCTCAGGATTGATATTGCTAAAATTTTTTGCACATCCATTTTCAAATATGTGGAAGATT
TTAATAATGCTTGTGTAATGTCCAAAACCCTTGGCATGCTGGCAGAAATGCTCAGTTGGTAAGC
TGATTTGCCTCTTGGTTTGTTTCTGTTTTGAATAAGTAGTGTTGAAGTATTCCTTTTCTTCTAT
TAAAGCCTTGACTATCTGTTTGTTGTAAATTATTTTGGCTAAGGAGTTTGTCTTTTCAGTGTTC
CATACCATGTGTTCAATGTGGCGTTGGACTGTGGCTTCTTCATTACACAATCTGGTGGTGCTTC
AAGGTAATCTAGTGTACGGGAATTGGTAAATAGGCTAATATACCTTTTCTTTTCCTCGAATGCG
CAGGAGAATTGCGCACCATTATATTAACAAGAAGGAAAAAAAGTCCAAAAGGAAAATAGGCTAA
TATACCTTGTTTTTTGCTGTATACAACCGTTTATTGGTACATTATTTATGTATTCTGAAACAAA
AGTTGTTCTATATTTCCAACTATCATCAATATTTGAATTTTTCAAAGTCAATAGTTCACTGCTT
CTTAATTATGTATGGATCACCTTTTTAAGTTCAATTATTGGGATGACCATGGTCATGATGGTCA
TACTTTCATGCATAGTGTAATTTTTTTTAACACCCTTTTACAGTGAGTTAAATGGGCTTTCGGG
CATTTTGAACTAAACTATCATTGTCTGCTGTACTTGTAAACATTGTTTCACCATACGAGCCCAA
GCTGATCATGCAGAAAAAGTTTCTTAATTAAAGTCAGTGACATTGACCATACTCAACTAATGCC
TTTGTTGAATGGCATACTGCAACCGATCAACCTGTTCACTACATGACTGCAAGGGGAAATAGTG
GTCATTTTGAAATAACTTTCACTACATGACTGCAAGGGTAAATAGTGGTCATTTTGAAACAGCT
ATACTCTTGGTTTCCTCAAGGAACTTGCATTGTGAAACATCTGTAAAGAAAATTAACTTTCATG
GTGAAATGGCTTGGAGTAAACTAATCTTAAAAAGTTCCAAGTCTGTTTAGTTCTTATGTATTTC
CAGCTGCTGTGGTTTTTTCTGCATGAAACTGTAGATATGAGAAAAAAACAAAAAAGTGAAAACT
ACAGTTTTCTCTGCAGTGATTGGCTTCTTTCTGGTGCGCTAGCAAGAATGCTTTTTGCTACCTC
TGAGGATAGTGGAGACTGTTCTTCACTTACAACTACAGGTATGCAATCTTGCTATCTCTGAAGT
TATAAATGGGTTTCTAATATTTTTTATTAAATTTATGTGAGATTTCTTCTCTGTTAATTAATTA
TGCAGTGCTCACTGCTCAGCATCTGCTTTCCTATATGCATTATATATTCATAATTATTTTCTGT
ACATATGATGATCTGATGATTTGCTATATTTTTTTAGTGCTTGATTTTGCCATCCAGGTTTTGC
GGAAAGGAGCTGCTGCTGATGATATAATATCATCATTCATTATATTTTCAGTTCAATACATCAT
GGTTAATCATATGAACTGGAAATACAAGAGTTATAGTCGCTGGAAGATAACCCTTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021