Detail information of BGIOSGA032547_circ_g.11


General Information
CircRNA Name BGIOSGA032547_circ_g.11
ID in PlantcircBase osi_circ_008796
Alias Chr10:3674465_3676033(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3054646-3056216  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.6 BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.8 BGIOSGA032547_circ_g.9 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.12 BGIOSGA032547_circ_g.13 BGIOSGA032547_circ_g.14 BGIOSGA032547_circ_g.15 BGIOSGA032547_circ_g.16
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA032547-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGACTGCAAACAAGTATTTCCTGCATTCTTGATGAGGTAGACAAAGTCAATGAGGTTGTTGCT
ATATTCAACCTTCTGTCTTCTGCTGCTCGTTATCAGggagttggttccaagtccgcctttcgtt
actatggttttgtcgtcctcgtcaaaaccattgcctttcgtcacagctgcaatatcattgatgt
cctttcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGTTGGTTCCAAGTCCGCCTTTCGTTACTATGGTTTTGTCGTCCTCGTCAAAACCATTGCCT
TTCGTCACAGCTGCAATATCATTGATGTCCTTTCAGAATTCAGTAAGTTTTTGTTTTTTTATAT
TGATTTTAACTTTGTGGTTTCCCCCTGAAAAATTATAACTTTGTATTCTCATTAAGCAATATAG
TTGTTATGTGCTAACTTTTGGGAAGGGTATCTGTGGTAGAGATTGGAGGGATAAGCAACAGATA
GAAGAAGTATCACTGTTGCGGGTGACATGAGGAGATGGAGAGATTTTCTTAACTTTTGGTTGAT
TAGCTGGGCCTGCATGGATGACATCCTTGTCTAAATCCATATATAACGATATCTCTAGTGATAG
AACAACCAACTGGTATGTAAAACAACCTAAATACCTAATCTTGCCATGCACTGAACCAGAGTGT
TGGGTTCCATTGATGACATTATACCCCTCCCTGTCATGCAACTTGCCTTAGAGATGTAGCTCAA
GAGGATCAGTGCACAGCTTGCACCTCCTCTTGTAAGTCCTATCTAGACAATATGGCCACCTGAT
AGGTTTTCTGGATCAAATTATATTGGTAATATTTGTCTATCTAATTAGCTTTGGTTAATGTCAT
TGTTGGATAGTTTGATGGGTTCCTGTATGCTACAGGCCAGCCATCCATAGAAATGCGCACATTC
ATCATCTTCCATTTACAACTTGCATTCATCAAAATATTATCCCAATCACATTATGCTTGTTCAA
ACAGTGAGGACAACAATAGAACTTGCAAATAAAGTAAAACAATGAACTTTTTTGTGCCTTCGAT
TTTCATTTCTCCCTTTTTGAGTAAAAGCTACTTCCTCCGTTTCATAATGTAAGCCATTCTAGCA
TTGCCTAAATTCATATAGATGTTAATAAATCTAGACATATATATGTCTAGATTCAGCATCATGA
ATTTATGGGGATCTGTGCATTGGACATCTTTTGCCTAAGAACAGGCTATTCCATCTAGAAATGT
CCAATACTTTTGTTTGCATGCATTTATATAGTGTTGCTGTAACCTAAACAATTTGTTAAGGCCA
AGTTGGTCACAAAATTGCATAAATTGCTATCCTGAAAAAAAGATTGTCCATGAAGCTTTTTCTT
TCTTCCTTTACTTTTCTGTTGTACGCTATTTCTCGTAACTTCCATAAGCCTTGGGACACTGACA
ATACTGATATATTTCTCAAGGCTATACAAGTTGCAGCCGCTAGAGTATTTTCAATGCTGTGCTT
CACTGCTTATAAAGCACAACCTCAACTCATGGAAAATGCCTACTTTGTTGTTAATGGTTCAGAG
GTTAGCAGCAGTGTTACCTAATATTTGTTTGACTGTCATGGTGTTCCGTGCAATTGATTTTTAT
TAACCTTGGTGTGTTGACATCATTAATTCTTCTTTTTCCCTTAACTTATTGTTCTCAGATTTGG
AGACTGCAAACAAGTATTTCCTGCATTCTTGATGAGGTAGACAAAGTCAATGAGGTTGTTGCTA
TATTCAACCTTCTGTCTTCTGCTGCTCGTTATCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021