Detail information of BGIOSGA032547_circ_g.13


General Information
CircRNA Name BGIOSGA032547_circ_g.13
ID in PlantcircBase osi_circ_008798
Alias Chr10:3921593_3925787(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3056111-3059953  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.6 BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.8 BGIOSGA032547_circ_g.9 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.11 BGIOSGA032547_circ_g.12 BGIOSGA032547_circ_g.14 BGIOSGA032547_circ_g.15 BGIOSGA032547_circ_g.16
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-CA
Number of exons covered BGIOSGA032547-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGTTTGCAGTACAATTATATCATTTTGTACTCCCTCCGTTTTTTAATAGATGACGCCGTTG
ACTTTTTCTCACATGTTTGACCATTTGTCTTATTCAgatttggagactgcaaacaagtatttcc
tgcattcttgatgaggtagacaaagtcaatgaggttgttgctatattcaaccttctgtcttctg
ctgctcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTTGGAGACTGCAAACAAGTATTTCCTGCATTCTTGATGAGGTAGACAAAGTCAATGAGGTT
GTTGCTATATTCAACCTTCTGTCTTCTGCTGCTCGTTATCAGGTATTGTTTATTCTATAGATGG
TCCTTTTTCATTGTGTGCGTGCATGCTCTATATAATCCATGAAAATTTGTCACTATTTTATTCC
AACAGTGTAGAGCATGCCATATGCACTCGTTTTCTATTTAGACGAGTTTATTCTTTTATAGCGG
TCAGCTGTTTGCGTTTCCCTATTTCTATGGAAGACTCCATCACTGAGATGATTGCCACTGCCTA
TTTTTTTTCTCAAACTTGTTAATGGGGGGGCACACTTATGCTAGGCATGGGAAGCAGCCGTTTC
CATCGCCAATGCAGTAAATCATGTTTTTGTTTCGATTGATCTTAATACCTTATAGGATTAGTTT
TCCTTTAGATAAGACTTGTTTACTAAAGGTTGGTTATATACTAGTTAGGAGTTTGTTGTCCTCT
GTCTTTATATAAAGGTGATGTCAGATCAATGGAATCAACCCGAAGTTAAGTTCCCATTTTCCTT
CCATTCCCCTGGTCCTATGTTTGTTACTGCTTGAAGGGGTGAGGATATCGGCATCACCCTTTAG
TCGAGTACAGCTGCCATCTTAGGGCCTGTTTGGCACAGTTCCAGGGCTCCACCTCTTTTGGAGT
TGGAGCCCAGCCAAACAGTTCACTCCACCTAAAATGGGAGCAGAGTTGGGTGGAGTGTTCTCAC
AAAATGAACTAGAGAGGTGGAGCTGGGTTTAGGCTGCTCCACAACTCCACTCCAGACCTAACTC
TTGGAGCTAAATTTAGGAGTTGGGAGCTCTACCAAACAGGCCCTTAGACACCTGGGTCCTCCCC
CAGATCCTAGCATAGACCTATTCAAATACTGGGTTGTGCCTGAAAAGTTGTCACAGCGCCAAGC
CTGAGCTCAGCCTTATCGTTGAGTTTGCACACTTTCCTAAGCCCAAAATGCCATTCTAGAACCA
GCTTGAGGTGCTACAATCAAATAGCTTCACGAAAGTCATCAGTTCATAAAGGTACTTCCTCCGT
CCCAAAATTTTGCTACCTAGGATGGGATTCGATCCATCTTAGGACAATGAATCTGGACAGAGTA
TAGGTCAAATCCCACCCTAGGTAGCAACATTTTGGGACGGAGGTAGTAGTAAACAAGAAATCCA
TTCAATATTCCTACATGTACCTCCATCAATGCTGAGTTGGGCCTGAAAAACTCCCTCCATCCCA
TTTCTAGCCTCTACCATTTGTCTCAAAATAAGCTTATTTCTGCAAATCTATGAGTTTTTTTTCC
TTCAATACCACTTACTTGCCTTACCCACCCACCCACCCACCCACCAATACTAATATCCTATTAA
GACTTAAGAGGGACACTTTGGTGTTTATCCCTCCACCTTATTTTGAACACCCAAGGCTAAAAAT
GGAGTTATTTGGGACAGATGGAGTGCTAAACAAGGAAACCATCAATTTTTATTCTACAGTAAAA
AAAGACAGACCGATCCAGAAATTATATGCACACAATCTAAGGCAAAGATCAAAAGAATTAGCAT
TAAATCTCATATGCCCTTAGATCTTGCATGTACCAAATTGGTCTTGTGAATATGGCTTATACCA
TGCTGTAGCCATGTAGGCTCAGAGAGCTGATGTTGCGCTTGTATGGTTGAGGGTTCACTTGCCA
GGAGGTAAAGTGGAAAATAAGCGGTGATCCCTGGCAACCAGAGCCTAAACTGGAAGACGATGTT
GTCACACCAAGTGAATTCCATTGTGTGGATAGCTAGGTTTAGGTACATAGCATGGTGGTTGGGA
TGGGTGAACAAATAGGAATTTTCTGACCTGCTTGAGACTAGCGGCACTTCCCTCATTTGTTACT
AATCTGTGGGGCTGGATGAAATCAAAGTCCTAGGGGTATTGGGCTGCCAGGCTGGGCTGCCCAT
GAAGAAGTCGAACATCTTAAGAAAAGAATTGTCATATGAGTTACCTTATTGGTAGTGGCCATAT
AGGGATAAGTTTGTATTGGGGACAGAGCATTGTTGTTTGTTGATATATGTCGACCGACAAGATC
TTTCTTCCTAGGTCTTGTTTAAATCTTTTAAATGATTTTTTTACATAAAACTAAATAACTAAAT
ATTTTACATGTACTCCCTCCTGTCTCATAGATATTTGACGTTTGGGAGTTGGGACAAGATTTTG
GATTAAACTTTTAAAACTTTTTGACAATCAAAATTATTATGATAGTACTTTTGAAGGCAAATCT
ACAGATACCATTGTTCCATATTTATGCTAAGCATTTGAGAAGTTATTGATGATTCAATCAAAGT
TTCAAATGTTTGACTGAATCTTGTTGGAAATGCCAAATATTTATGACCGAAGAGAGCCACAGGT
TAACTTCGCCATTTTTTTTTTGTTGCAGCCTGCTCTTCTTATTTCCTTGATAGAACAGAGTACA
AGGGCGCAAGCAGATTCTGATAATTCCGCTCATGAGCAGAGCAGTAAATATTTTGTTCTGAACC
CTTCAGGAAGCAATCCTAGACTTGTTGAGCAAATCTTGGGTTATATTGGACGATCCACTGAGCT
TATGGATAGGTAAAGGATTCTTTGACATTTCTCACTGTTTCTTTGTGCTTCATCTTGTGTTCCC
TTGAAGCAAAGGTTGAAGAGTCAAATCTTGGTAGGTCAGAAACATAATTTTTTACCCCAGAAGA
GTATTTCCACTGCCTCATTTCCAGAGTCTTCGCTTTAATTGTTGCACCTTTTATTCTAGTGCTG
ATACTTTTGCTCTTCTATTTTATGCGTGTGGTTGAGCTGAACAATGTTATTTTCAGATCTCCTT
CTATATTATCAGGTGTTCTTGATCTACTGAAGGCATTATGGGAAAGTGGTGCTCAATTTATATA
CATTTTAGAGAAACTGAGAAGTTCTAGAACATTCTGGGAGAACTTATCATGCTGTATTCGTGCT
GCTTTTGCTAGTTACCCTATCGACAGCGTTGAGACCGTTGATGAAAAAAAATCTTTGAGGTATG
GTCATCATGCTTTAGCTTTCCATTTCCTACATGCTAACTGTAATATCTGCCCAAGAGTTCTATT
GAATAATATTTCTTTTAAAATTTAAAACATTTTTGGGTTTGAAGCCACCAGTGATGGTTTCATC
ATATGAATCCAATTTGACTGGTCTCAGTTTTTTGTTATCGACTGGATCCTGTTTCAGAATTTGA
TATTAAATACAACCTTTCATAGATAAGATTTAATACCATGGTTCTCAGAATGATAAAGCAAGGT
TTTGCATATGCAGATATTGTTGTCTTGGTACAATTTTTGAGATCATGTCATATGAGTTGTTCTT
GCAAGGAAAGTTGCTTACAGAAACAAAAACTTCTGATCCTGCCCCTGTTGGTTCAAAGGAGCAA
AAAGAACCTTCTGTTGCACCTTGTCCAAGTGACATAGTGCTCAAATGGTTTGATAGCACGACTA
TGGAGGATTGTAAATCATCTATCAAAGTAATGGGTACCAAAATGATCTTCTTCATCGTGCTAAG
GTAACTTTCCAGTTCTTGACTTCTGAAATAAAGTGAAGAGAATGTTGTTTGTTTATTTTGAACT
TTTATTGTTTTACGCCCAAGAGATTTTTGGTCACTCATTGGTTATCTGACTTCCTTAGCACGCA
TTGTGACTTATATAGGCTTATAAATATTGATATGTGTTTGCAGTACAATTATATCATTTTGTAC
TCCCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTTGTCTTAT
TCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021