Detail information of BGIOSGA032547_circ_g.12


General Information
CircRNA Name BGIOSGA032547_circ_g.12
ID in PlantcircBase osi_circ_008797
Alias Chr10:3921363_3925787(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3055881-3059953  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.6 BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.8 BGIOSGA032547_circ_g.9 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.11 BGIOSGA032547_circ_g.13 BGIOSGA032547_circ_g.14 BGIOSGA032547_circ_g.15 BGIOSGA032547_circ_g.16
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-AA
Number of exons covered BGIOSGA032547-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGTTTGCAGTACAATTATATCATTTTGTACTCCCTCCGTTTTTTAATAGATGACGCCGTTG
ACTTTTTCTCACATGTTTGACCATTTGTCTTATTCAggctatacaagttgcagccgctagagta
ttttcaatgctgtgcttcactgcttataaagcacaacctcaactcatggaaaatgcctactttg
ttgttaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTATACAAGTTGCAGCCGCTAGAGTATTTTCAATGCTGTGCTTCACTGCTTATAAAGCACAA
CCTCAACTCATGGAAAATGCCTACTTTGTTGTTAATGGTTCAGAGGTTAGCAGCAGTGTTACCT
AATATTTGTTTGACTGTCATGGTGTTCCGTGCAATTGATTTTTATTAACCTTGGTGTGTTGACA
TCATTAATTCTTCTTTTTCCCTTAACTTATTGTTCTCAGATTTGGAGACTGCAAACAAGTATTT
CCTGCATTCTTGATGAGGTAGACAAAGTCAATGAGGTTGTTGCTATATTCAACCTTCTGTCTTC
TGCTGCTCGTTATCAGGTATTGTTTATTCTATAGATGGTCCTTTTTCATTGTGTGCGTGCATGC
TCTATATAATCCATGAAAATTTGTCACTATTTTATTCCAACAGTGTAGAGCATGCCATATGCAC
TCGTTTTCTATTTAGACGAGTTTATTCTTTTATAGCGGTCAGCTGTTTGCGTTTCCCTATTTCT
ATGGAAGACTCCATCACTGAGATGATTGCCACTGCCTATTTTTTTTCTCAAACTTGTTAATGGG
GGGGCACACTTATGCTAGGCATGGGAAGCAGCCGTTTCCATCGCCAATGCAGTAAATCATGTTT
TTGTTTCGATTGATCTTAATACCTTATAGGATTAGTTTTCCTTTAGATAAGACTTGTTTACTAA
AGGTTGGTTATATACTAGTTAGGAGTTTGTTGTCCTCTGTCTTTATATAAAGGTGATGTCAGAT
CAATGGAATCAACCCGAAGTTAAGTTCCCATTTTCCTTCCATTCCCCTGGTCCTATGTTTGTTA
CTGCTTGAAGGGGTGAGGATATCGGCATCACCCTTTAGTCGAGTACAGCTGCCATCTTAGGGCC
TGTTTGGCACAGTTCCAGGGCTCCACCTCTTTTGGAGTTGGAGCCCAGCCAAACAGTTCACTCC
ACCTAAAATGGGAGCAGAGTTGGGTGGAGTGTTCTCACAAAATGAACTAGAGAGGTGGAGCTGG
GTTTAGGCTGCTCCACAACTCCACTCCAGACCTAACTCTTGGAGCTAAATTTAGGAGTTGGGAG
CTCTACCAAACAGGCCCTTAGACACCTGGGTCCTCCCCCAGATCCTAGCATAGACCTATTCAAA
TACTGGGTTGTGCCTGAAAAGTTGTCACAGCGCCAAGCCTGAGCTCAGCCTTATCGTTGAGTTT
GCACACTTTCCTAAGCCCAAAATGCCATTCTAGAACCAGCTTGAGGTGCTACAATCAAATAGCT
TCACGAAAGTCATCAGTTCATAAAGGTACTTCCTCCGTCCCAAAATTTTGCTACCTAGGATGGG
ATTCGATCCATCTTAGGACAATGAATCTGGACAGAGTATAGGTCAAATCCCACCCTAGGTAGCA
ACATTTTGGGACGGAGGTAGTAGTAAACAAGAAATCCATTCAATATTCCTACATGTACCTCCAT
CAATGCTGAGTTGGGCCTGAAAAACTCCCTCCATCCCATTTCTAGCCTCTACCATTTGTCTCAA
AATAAGCTTATTTCTGCAAATCTATGAGTTTTTTTTCCTTCAATACCACTTACTTGCCTTACCC
ACCCACCCACCCACCCACCAATACTAATATCCTATTAAGACTTAAGAGGGACACTTTGGTGTTT
ATCCCTCCACCTTATTTTGAACACCCAAGGCTAAAAATGGAGTTATTTGGGACAGATGGAGTGC
TAAACAAGGAAACCATCAATTTTTATTCTACAGTAAAAAAAGACAGACCGATCCAGAAATTATA
TGCACACAATCTAAGGCAAAGATCAAAAGAATTAGCATTAAATCTCATATGCCCTTAGATCTTG
CATGTACCAAATTGGTCTTGTGAATATGGCTTATACCATGCTGTAGCCATGTAGGCTCAGAGAG
CTGATGTTGCGCTTGTATGGTTGAGGGTTCACTTGCCAGGAGGTAAAGTGGAAAATAAGCGGTG
ATCCCTGGCAACCAGAGCCTAAACTGGAAGACGATGTTGTCACACCAAGTGAATTCCATTGTGT
GGATAGCTAGGTTTAGGTACATAGCATGGTGGTTGGGATGGGTGAACAAATAGGAATTTTCTGA
CCTGCTTGAGACTAGCGGCACTTCCCTCATTTGTTACTAATCTGTGGGGCTGGATGAAATCAAA
GTCCTAGGGGTATTGGGCTGCCAGGCTGGGCTGCCCATGAAGAAGTCGAACATCTTAAGAAAAG
AATTGTCATATGAGTTACCTTATTGGTAGTGGCCATATAGGGATAAGTTTGTATTGGGGACAGA
GCATTGTTGTTTGTTGATATATGTCGACCGACAAGATCTTTCTTCCTAGGTCTTGTTTAAATCT
TTTAAATGATTTTTTTACATAAAACTAAATAACTAAATATTTTACATGTACTCCCTCCTGTCTC
ATAGATATTTGACGTTTGGGAGTTGGGACAAGATTTTGGATTAAACTTTTAAAACTTTTTGACA
ATCAAAATTATTATGATAGTACTTTTGAAGGCAAATCTACAGATACCATTGTTCCATATTTATG
CTAAGCATTTGAGAAGTTATTGATGATTCAATCAAAGTTTCAAATGTTTGACTGAATCTTGTTG
GAAATGCCAAATATTTATGACCGAAGAGAGCCACAGGTTAACTTCGCCATTTTTTTTTTGTTGC
AGCCTGCTCTTCTTATTTCCTTGATAGAACAGAGTACAAGGGCGCAAGCAGATTCTGATAATTC
CGCTCATGAGCAGAGCAGTAAATATTTTGTTCTGAACCCTTCAGGAAGCAATCCTAGACTTGTT
GAGCAAATCTTGGGTTATATTGGACGATCCACTGAGCTTATGGATAGGTAAAGGATTCTTTGAC
ATTTCTCACTGTTTCTTTGTGCTTCATCTTGTGTTCCCTTGAAGCAAAGGTTGAAGAGTCAAAT
CTTGGTAGGTCAGAAACATAATTTTTTACCCCAGAAGAGTATTTCCACTGCCTCATTTCCAGAG
TCTTCGCTTTAATTGTTGCACCTTTTATTCTAGTGCTGATACTTTTGCTCTTCTATTTTATGCG
TGTGGTTGAGCTGAACAATGTTATTTTCAGATCTCCTTCTATATTATCAGGTGTTCTTGATCTA
CTGAAGGCATTATGGGAAAGTGGTGCTCAATTTATATACATTTTAGAGAAACTGAGAAGTTCTA
GAACATTCTGGGAGAACTTATCATGCTGTATTCGTGCTGCTTTTGCTAGTTACCCTATCGACAG
CGTTGAGACCGTTGATGAAAAAAAATCTTTGAGGTATGGTCATCATGCTTTAGCTTTCCATTTC
CTACATGCTAACTGTAATATCTGCCCAAGAGTTCTATTGAATAATATTTCTTTTAAAATTTAAA
ACATTTTTGGGTTTGAAGCCACCAGTGATGGTTTCATCATATGAATCCAATTTGACTGGTCTCA
GTTTTTTGTTATCGACTGGATCCTGTTTCAGAATTTGATATTAAATACAACCTTTCATAGATAA
GATTTAATACCATGGTTCTCAGAATGATAAAGCAAGGTTTTGCATATGCAGATATTGTTGTCTT
GGTACAATTTTTGAGATCATGTCATATGAGTTGTTCTTGCAAGGAAAGTTGCTTACAGAAACAA
AAACTTCTGATCCTGCCCCTGTTGGTTCAAAGGAGCAAAAAGAACCTTCTGTTGCACCTTGTCC
AAGTGACATAGTGCTCAAATGGTTTGATAGCACGACTATGGAGGATTGTAAATCATCTATCAAA
GTAATGGGTACCAAAATGATCTTCTTCATCGTGCTAAGGTAACTTTCCAGTTCTTGACTTCTGA
AATAAAGTGAAGAGAATGTTGTTTGTTTATTTTGAACTTTTATTGTTTTACGCCCAAGAGATTT
TTGGTCACTCATTGGTTATCTGACTTCCTTAGCACGCATTGTGACTTATATAGGCTTATAAATA
TTGATATGTGTTTGCAGTACAATTATATCATTTTGTACTCCCTCCGTTTTTTAATAGATGACGC
CGTTGACTTTTTCTCACATGTTTGACCATTTGTCTTATTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021