Detail information of BGIOSGA032547_circ_g.14


General Information
CircRNA Name BGIOSGA032547_circ_g.14
ID in PlantcircBase osi_circ_008799
Alias Chr10:3677911_3679647(MH63RS2), Chr10:3677911_3679647(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3058570-3059953  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.6 BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.8 BGIOSGA032547_circ_g.9 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.11 BGIOSGA032547_circ_g.12 BGIOSGA032547_circ_g.13 BGIOSGA032547_circ_g.15 BGIOSGA032547_circ_g.16
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-CA
Number of exons covered BGIOSGA032547-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGTTTGCAGTACAATTATATCATTTTGTACTCCCTCCGTTTTTTAATAGATGACGCCGTTG
ACTTTTTCTCACATGTTTGACCATTTGTCTTATTCAgcctgctcttcttatttccttgatagaa
cagagtacaagggcgcaagcagattctgataattccgctcatgagcagagcagtaaatattttg
ttctgaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTGCTCTTCTTATTTCCTTGATAGAACAGAGTACAAGGGCGCAAGCAGATTCTGATAATTCC
GCTCATGAGCAGAGCAGTAAATATTTTGTTCTGAACCCTTCAGGAAGCAATCCTAGACTTGTTG
AGCAAATCTTGGGTTATATTGGACGATCCACTGAGCTTATGGATAGGTAAAGGATTCTTTGACA
TTTCTCACTGTTTCTTTGTGCTTCATCTTGTGTTCCCTTGAAGCAAAGGTTGAAGAGTCAAATC
TTGGTAGGTCAGAAACATAATTTTTTACCCCAGAAGAGTATTTCCACTGCCTCATTTCCAGAGT
CTTCGCTTTAATTGTTGCACCTTTTATTCTAGTGCTGATACTTTTGCTCTTCTATTTTATGCGT
GTGGTTGAGCTGAACAATGTTATTTTCAGATCTCCTTCTATATTATCAGGTGTTCTTGATCTAC
TGAAGGCATTATGGGAAAGTGGTGCTCAATTTATATACATTTTAGAGAAACTGAGAAGTTCTAG
AACATTCTGGGAGAACTTATCATGCTGTATTCGTGCTGCTTTTGCTAGTTACCCTATCGACAGC
GTTGAGACCGTTGATGAAAAAAAATCTTTGAGGTATGGTCATCATGCTTTAGCTTTCCATTTCC
TACATGCTAACTGTAATATCTGCCCAAGAGTTCTATTGAATAATATTTCTTTTAAAATTTAAAA
CATTTTTGGGTTTGAAGCCACCAGTGATGGTTTCATCATATGAATCCAATTTGACTGGTCTCAG
TTTTTTGTTATCGACTGGATCCTGTTTCAGAATTTGATATTAAATACAACCTTTCATAGATAAG
ATTTAATACCATGGTTCTCAGAATGATAAAGCAAGGTTTTGCATATGCAGATATTGTTGTCTTG
GTACAATTTTTGAGATCATGTCATATGAGTTGTTCTTGCAAGGAAAGTTGCTTACAGAAACAAA
AACTTCTGATCCTGCCCCTGTTGGTTCAAAGGAGCAAAAAGAACCTTCTGTTGCACCTTGTCCA
AGTGACATAGTGCTCAAATGGTTTGATAGCACGACTATGGAGGATTGTAAATCATCTATCAAAG
TAATGGGTACCAAAATGATCTTCTTCATCGTGCTAAGGTAACTTTCCAGTTCTTGACTTCTGAA
ATAAAGTGAAGAGAATGTTGTTTGTTTATTTTGAACTTTTATTGTTTTACGCCCAAGAGATTTT
TGGTCACTCATTGGTTATCTGACTTCCTTAGCACGCATTGTGACTTATATAGGCTTATAAATAT
TGATATGTGTTTGCAGTACAATTATATCATTTTGTACTCCCTCCGTTTTTTAATAGATGACGCC
GTTGACTTTTTCTCACATGTTTGACCATTTGTCTTATTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021