Detail information of Os04g0609700_circ_g.2


General Information
CircRNA Name Os04g0609700_circ_g.2
ID in PlantcircBase osa_circ_025166
Alias NA
Organism Oryza sativa
Position chr4: 30902640-30903333  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0609700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCATATTTGATTTGAAATGCCTTCTGTAAATGATTCACCTGCTGATAGGAGCTCAAGGCGGAA
CTCAGCCCAAAATTCGGCTGCCTTTCTGTACATATTcttgttgaaaagaatcaggcttcggagg
tagagggtaattttcttctaccagctttagaagcagctcccgaggaccagaaacaaagtcttcc
atttcaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTTGAAAAGAATCAGGCTTCGGAGGTAGAGGGTAATTTTCTTCTACCAGCTTTAGAAGCAG
CTCCCGAGGACCAGAAACAAAGTCTTCCATTTCAACACCCTGGTTCATATTGGAAGCAATCAAT
AATTCGGAGTATTAGGTCAGTTAGGAAGGCGCTACAATATGATGAAGAGACAAATAAAATGTTC
CTTTGGAAATATAAGCTCACATATTTTGTGATAGCTTCTTCTGTTCGAGCCTCTCCAGTGCTCT
GAAGACCAACCACCACACACTTATTCTCTGCCAGGGCCTCCTTAGCCAACTTCACAACAGCAGG
TACTTTTGCAGACATGCACATATGCCTGAAGAAACGCTGTATAACATAGAAAATCAATTTTGCA
AGAATAATTAACCACCCTACTCTTTATTTCATATTAGAAGTTTACTTGTCAACTTTTGAATATG
CTAAATCAGGGGTAATATTTATGCTAGAAATGCATTCATGGAACTGAGAAGGATGCAAATATTG
CAAAGTAAAAACAAAAGGTTTGATAGAAATTTATTTCAGAATATGTAAGGAGGTAACACCTGAT
GGCTAGCCCAATATAGCCGCCATATTTGATTTGAAATGCCTTCTGTAAATGATTCACCTGCTGA
TAGGAGCTCAAGGCGGAACTCAGCCCAAAATTCGGCTGCCTTTCTGTACATATT
Conservation Information
Conserved circRNAs NA
PMCS 0.174112716
Functional Information
Coding potential Y
Potential coding position 30903265-30902644(+)
30903252-30902667(+)
30903332-30903301(-)
Potential amino acid sequence MIHLLIGAQGGTQPKIRLPFCTYSC*(+)
MPSVNDSPADRSSRRNSAQNSAAFLYIFLLKRIRLRR*(+)
MYRKAAEFWAEFRLELLSAGESFTEGISNQIWRLYWASHQRFFRHMCMSAKVPAVVKLAKEALA
ENKCVVVGLQSTGEARTEEAITKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQEYVQKG
SRILG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017