Detail information of 1_circ_igg.7


General Information
CircRNA Name 1_circ_igg.7
ID in PlantcircBase ath_circ_011137
Alias At_ciR19
Organism Arabidpsis thaliana
Position chr1: 30059178-30063940  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.6 AT1G79920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G79920_circ_g.9 AT1G79920_circ_g.10 AT1G79920_circ_g.11 1_circ_ag.12 1_circ_ag.13 AT1G79920_circ_g.14 1_circ_ag.15 AT1G79920_circ_g.16 AT1G79920_circ_g.17 AT1G79920_circ_g.18 AT1G79930_circ_g.1 AT1G79930_circ_g.2 AT1G79930_circ_g.3
Support reads 647/85
Tissues leaf/root, aerial, inflorescences, seed, whole_plant
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCTCACTCTTGCCCTCATCCGCCTGCTCACCTCCCTTGGCTTGTGGTGCCTCTGCTTTAGCC
ACCGGCTTTGGTTTGGTCATTATAGGCCTGCAAAACttgtccaatgcctctgccttgcttttta
cgtcagctgacaagagagccggtgtggcatacttgggaagcgtgtcctgctgctgctgcttctc
ccgcagcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTCCAATGCCTCTGCCTTGCTTTTTACGTCAGCTGACAAGAGAGCCGGTGTGGCATACTTGG
GAAGCGTGTCCTGCTGCTGCTGCTTCTCCCGCAGCCATGCTTCTGCTTCCACACACTCGTTCAA
AACCTTAATCATTGCACAAGAACAAAACACATTTCAAACCATTTTACCCAAGCCTGTGAAATTT
AAGATTTGTTCTGCGCTTTCGAGATGAGCCGAATTATTACCTTTTGCTTCTCTGCCAATTCAAT
GTGATCAAACTTGGGATCATTAGACACAGCTGCCTCTCTGTAGCTGTTAATACAGTAGCCAAGC
TGATCAATGACCGACCCTCTTTCCAACGACTCCTTGTAACGCACTTCAACAGGGTCACCCACCT
GCATAATATTAATCCCACTCCTCTGTTAAAACATTATCCTGAAATATGATTTCTTCCTGCACAA
TATAAAGTGTCATCATATGCATGGTTTACCTTCTTGAGCTCCTCGAGCTTTGCAACATAAACAC
CTTTGGTCTCATCTTCCCCATCTTCATACAACCAATCCTCAACTTCCTGCAGATTCGCCAGGAA
TGCTTCCCTCTCCGAGTCAGTGATATATTCTGGTATTTGTCACTCAGCTGAAAACAAGACACGT
CAGTACTCAATACTCAAAACTTTACATATGCATACTGCCAATGAAAAGACGAAATAAAGATTTC
TCACTTTGTTTCGCATATCATAAACATAAGACTCAACAGCATTCTTCCGGTCCTTGGTCTCTTC
CATAACTCTGTCTTGCAGAGCCATCTCAAATTCCTTCTCCACTGCCTTTTCAACTTCCACAGTT
TTCAAGGCACCATAGACCAATTCTGACAGTGGTACATTTGTTTTCTTCACCTTCTTCTTTGGAG
CCTCTGCCTGCACAATCCAATAATAAAGTATCCATAATTATTTATTGTTCACAAGCGAATAGCA
AACAGTATGAGGTAAGAGAGAAACTAGCCTTTGAATCAGTTTCCATTTGCACCGGCTTCTCAGC
AGACTCTGGAACACCATTGTCAGTACCAGTTGCATCACTGGTATCTTTGGCGTCCTGCATGTTA
ACATCAGAGTCACCAGAAGCAGGAGCTGCCTCGGCAGAAGCTTTGTCAGTGTCCATCTTAGCAG
TTTCCTCTGATTGATCTTTTGTGACCGATACTTCAACTTCTTCCTCTTCCAAAAGCTGCATTTA
GGAGAGATAAAAGTGGATAAATTAACGAACCATAAGTGGCTAAGTTCATAAGGTAAGCCACGGT
TCTGCATGATCAACTTGTAATCAGTTAATAGAGAGAATCGGCCTTTAAATAGTTCACGTAAAGA
AACTTACAGTTGCTGATTCAACAGAGACAATTCCATGCAGGTTCAATCTAACTTTCACTTTCAG
CTTTGCCCTCTCGCCTTTTGATGACTGGAAGGGACCAATCTACAAAAAGGAGATCCACCATTAG
AAACAAGAGCACTACAGTCATACATAGTCTTGACATTGGGCAAAGATCAAACCGTGTATGTGCT
GATTTTAGGAGGTGCTTGCAAATCGTTCACATCACTGTACTGCACATCAATAGAGAATGTTCCA
GAACGATAAAATGTTAGAGCCTTGACACTAGGAATAGGATTTCCTTTCGGAAAAACAATAGTGC
TCTGCTGGTTCTCAGTGCCTCCATTTTGAGCATCAGTCGCTGCTCCTTTCCAAGCAAGCGATAT
TGAGAAAGGGAAGCTCTCATGAACCTAAGAGAACAAAAAATAAATCATAATATGACTAGTCAGA
TAACCTGGAGTATAACAGTTCTCGAGTTGCTTACAAGTACATTAAAATAACGACATTTACTTAA
GCATAGATATGCACAAATTACCTGGAATTCGCGAACTTTAAAGGTCGGACTGAGAATGGCACAC
TGCAAGGCACATCCCCTCGACACACACTCACTTGCATTCATTGTACGCCTGGGCTCCTTACCAA
AAAACTCAGTTAGAATCTTGATCATAGCAGGGACACGAGAGCCAGAGCCGACAACCTCGACCAT
ATGTACATCTTCAACAGTGAGGCCCGCATCAGAGAGAGCTTTCTCTAAAGGCCTCTTAACACGC
TCCAAAATCGGGATGCTGATCTCTTCAAACTCTTCCCTCTTGATGACACCCCTAACATCTTTCT
CAGCCATCAAACACTCGATATTCAATGGTGCCATAGGATTAGCGCTTAGAACCTTTTTCAGTTT
CTCGCATGTAGCGCGGAGCCTGAGAGAAGCCTTAGCATTCTGGGAGACGTCAATCTTGTACTCG
TCCTTGAACTTAGCAGCAAAATGATTGAAAAGAACTTCATCAAAATCCCTTCCCCCAAGGGAGC
GATCGAAAGCGTGAGACAAGATTTTGAGCTGTCCTTTTTTGAAGCCTGCAATACAGACTTGCAT
GCTTGCGTGTCCAATGTCAATGAATGCAACATTGAGCTGGTCATTCTCTGGCAGATCTGTCTTA
TAAATTCCGTATGCCAAAGCCGTAGCTGTAGTCTCATGGATCAAGTGCAAGGGATGCAAGCCTG
CAATTGTGGCAGCATCGAGAACAGCCCTACGCTGGAGGTCGGTAAAGTAAACAGGAATACCAAT
ACAGCAGTCGACCACAGCTGTATTCAAATTCTTCTCAGCAATACCTTTCAAGTTGGACAACATC
ATACCCATGACCTGAGTCGGGGTAAAGGCTCTAATCTCTCCCAAATAATTAGCATGGATCAAAG
GATAGCCATCAGGGCCTTCAGTGACAGAAAAGGGAAGGGATTTGATATCCCTTTGAAGCTCAGG
GTCGGAAAACTGGCGACCAATTAAGCGCTTGATTTGTGAGATGGAGTTTTTGGGGTTCATCATG
GTAGAAGCAGCTCCAGCAGTACCGATGAAGCGCTGCTTGTCACCAAAGCAAACGATAGCCGGAG
TCTCGCGATTTGACTCATCATTAAGCACGACGTCGATACCTCTTTGCCTTGCAACAGCAACAAG
GCAATTCTCGTTTCCAAAATCAAAACCAACTACACTCATTGTTAGGCTTTGTGTTCTTCAGTAC
TGGGGCGTCCCACGTGTTCGATAGCAACCTTATAGAACAAAAAAAAGAAAAACACTATCAGATA
GCGATCGAAGCAGACTAGTCTTGAGCTCGAGAGATTACAGGAGATGACGAATTGGCGGTAACTC
AGGCCAGGTAGCCTTAAACCATCGTATTACTAAACCTAAAATAAAACCACCAGTTTGGGTTTAC
ATCAACAATACATACAACGAAGATTGGTGGAGTTTGAAACTAAAATACAAATCCGGAAGCAGCG
AAAGCAGAAGATTCATATTGAAACACAAGTACGAGGAACAAGTAATCTGGCAACAAGAAATAAA
TAAAACCTAAAAGTGAGGAAAAAGAGAAGCATCAGATCTAGAAGATCTGCAACTAGAGCATACC
TGGATCGCGAGAGGGGTTCGCGTTCTGGAAGCTTCCACCGAAATCTGGGTGAAGGTGAGAAATC
TGTAATCGTGTCGCAGCCAAAAAGTGAAGAGGAAGGGAGAAGAGCTTCTTTTATAAAGGAAGAG
CAAGAGAGAAGAGGTTTTAATTAAGGAGCAGACACCACCACAGGGTTTGGGTTCCTCTGGAATG
TTCTTCTCCTTTCCTTTTTTTTTTTTATTTTAAAAACACTTTCATTTCCTTTTTATTTTTGTGA
TATTTTTGCCTAAATTATTTATTTATTGCCTTTTTTTTTCTTAGGTTTTTTTTTTTTATCCCAG
TGTTTTTGTATATTTTTATTCGAGTCTACATATAATTATTTAAACCCAATGTATTTAAAATTAA
TAAAATTATTATAGAGAAGTGGCTGGTGTTATCAGAATTTGTGGTACATAAGATATGCACGAAC
TAATTGCATTGTGGTGTCTGGAACATGCCATTATCTGCGGCGCCCAGAGATGATTCATGGATTT
ATGTTAGAGATTTTCATTGTCCTCACTGGTGCAGGCAGCTTAATCACATATCGTAGCAGTCGCA
CTCATTCTGTGCTCATAACGAGGAAATGAATTCATCCTTGTTTAACCCCGTTTGGATTGGAGAA
ACGATACAACTTCAGCCTGGATGACCTCAAAGATGTTGCCAAAGGCTACGACTGCTTCATCAAG
GAAGATGTTCTTTGTACAACAATGGTAAGGAAGAGAAGTGAGGAAGACGAGTTTTGTCACACTG
ATTTCACGTAAGATATAAGAGAAAAGATGTTAAGCTTAGGGGGTTCAAAGTTGCCTTTTAAAGC
TCCAATATATATAGAACCAAATTGCATTTCATTTGCTGTTTATAAAAACAGCCCAGTCCAACAT
AGAACGAATCCGTGTACACTCCATAATAGTTATATAGAGGAGCAGAAAAAATGACTTTCAAATT
AAAAACAAAACCACAAGGAACAATAAGAAAAAAGATGCTTCCTAAAAATTGTTTTCGAAAAGGA
AGAATTAACAATATAGATTTTTTCCGGGAATAATAGCGAAACCAGAAAAAGAGGTTCCACTAGG
TAAATCAAAAAGAGTTAAGAACAAAATCGATACAACACCATCTCTCTCTCGTCATTCATTTAGG
TACTACCTTCCGCGGGATTCTCAGTCTCCATTGGTTCGGCAGAAGCTGGTTGCTCTGGCTCACT
CTTGCCCTCATCCGCCTGCTCACCTCCCTTGGCTTGTGGTGCCTCTGCTTTAGCCACCGGCTTT
GGTTTGGTCATTATAGGCCTGCAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.92530338
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017