Detail information of 1_circ_ag.15


General Information
CircRNA Name 1_circ_ag.15
ID in PlantcircBase ath_circ_011152
Alias At_ciR45
Organism Arabidpsis thaliana
Position chr1: 30061055-30065772  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.6 1_circ_igg.7 AT1G79920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G79920_circ_g.9 AT1G79920_circ_g.10 AT1G79920_circ_g.11 1_circ_ag.12 1_circ_ag.13 AT1G79920_circ_g.14 AT1G79920_circ_g.16 AT1G79920_circ_g.17 AT1G79920_circ_g.18 AT1G79930_circ_g.1 AT1G79930_circ_g.2 AT1G79930_circ_g.3
Support reads 202/46
Tissues leaf/root, aerial, inflorescences, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACAATGGTGCTCTGCTGATTCTCAGCTCCTCCATTTTGAGCTTCAGAAGCTGCTCCTTTCCA
AGCGAGAGAAATTGAGAAAGGGAAGCTCTCATGAACctggaattcgcgaactttaaaggtcgga
ctgagaatggcacactgcaaggcacatcccctcgacacacactcacttgcattcattgtacgcc
tgggctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAATTCGCGAACTTTAAAGGTCGGACTGAGAATGGCACACTGCAAGGCACATCCCCTCGAC
ACACACTCACTTGCATTCATTGTACGCCTGGGCTCCTTACCAAAAAACTCAGTTAGAATCTTGA
TCATAGCAGGGACACGAGAGCCAGAGCCGACAACCTCGACCATATGTACATCTTCAACAGTGAG
GCCCGCATCAGAGAGAGCTTTCTCTAAAGGCCTCTTAACACGCTCCAAAATCGGGATGCTGATC
TCTTCAAACTCTTCCCTCTTGATGACACCCCTAACATCTTTCTCAGCCATCAAACACTCGATAT
TCAATGGTGCCATAGGATTAGCGCTTAGAACCTTTTTCAGTTTCTCGCATGTAGCGCGGAGCCT
GAGAGAAGCCTTAGCATTCTGGGAGACGTCAATCTTGTACTCGTCCTTGAACTTAGCAGCAAAA
TGATTGAAAAGAACTTCATCAAAATCCCTTCCCCCAAGGGAGCGATCGAAAGCGTGAGACAAGA
TTTTGAGCTGTCCTTTTTTGAAGCCTGCAATACAGACTTGCATGCTTGCGTGTCCAATGTCAAT
GAATGCAACATTGAGCTGGTCATTCTCTGGCAGATCTGTCTTATAAATTCCGTATGCCAAAGCC
GTAGCTGTAGTCTCATGGATCAAGTGCAAGGGATGCAAGCCTGCAATTGTGGCAGCATCGAGAA
CAGCCCTACGCTGGAGGTCGGTAAAGTAAACAGGAATACCAATACAGCAGTCGACCACAGCTGT
ATTCAAATTCTTCTCAGCAATACCTTTCAAGTTGGACAACATCATACCCATGACCTGAGTCGGG
GTAAAGGCTCTAATCTCTCCCAAATAATTAGCATGGATCAAAGGATAGCCATCAGGGCCTTCAG
TGACAGAAAAGGGAAGGGATTTGATATCCCTTTGAAGCTCAGGGTCGGAAAACTGGCGACCAAT
TAAGCGCTTGATTTGTGAGATGGAGTTTTTGGGGTTCATCATGGTAGAAGCAGCTCCAGCAGTA
CCGATGAAGCGCTGCTTGTCACCAAAGCAAACGATAGCCGGAGTCTCGCGATTTGACTCATCAT
TAAGCACGACGTCGATACCTCTTTGCCTTGCAACAGCAACAAGGCAATTCTCGTTTCCAAAATC
AAAACCAACTACACTCATTGTTAGGCTTTGTGTTCTTCAGTACTGGGGCGTCCCACGTGTTCGA
TAGCAACCTTATAGAACAAAAAAAAGAAAAACACTATCAGATAGCGATCGAAGCAGACTAGTCT
TGAGCTCGAGAGATTACAGGAGATGACGAATTGGCGGTAACTCAGGCCAGGTAGCCTTAAACCA
TCGTATTACTAAACCTAAAATAAAACCACCAGTTTGGGTTTACATCAACAATACATACAACGAA
GATTGGTGGAGTTTGAAACTAAAATACAAATCCGGAAGCAGCGAAAGCAGAAGATTCATATTGA
AACACAAGTACGAGGAACAAGTAATCTGGCAACAAGAAATAAATAAAACCTAAAAGTGAGGAAA
AAGAGAAGCATCAGATCTAGAAGATCTGCAACTAGAGCATACCTGGATCGCGAGAGGGGTTCGC
GTTCTGGAAGCTTCCACCGAAATCTGGGTGAAGGTGAGAAATCTGTAATCGTGTCGCAGCCAAA
AAGTGAAGAGGAAGGGAGAAGAGCTTCTTTTATAAAGGAAGAGCAAGAGAGAAGAGGTTTTAAT
TAAGGAGCAGACACCACCACAGGGTTTGGGTTCCTCTGGAATGTTCTTCTCCTTTCCTTTTTTT
TTTTTATTTTAAAAACACTTTCATTTCCTTTTTATTTTTGTGATATTTTTGCCTAAATTATTTA
TTTATTGCCTTTTTTTTTCTTAGGTTTTTTTTTTTTATCCCAGTGTTTTTGTATATTTTTATTC
GAGTCTACATATAATTATTTAAACCCAATGTATTTAAAATTAATAAAATTATTATAGAGAAGTG
GCTGGTGTTATCAGAATTTGTGGTACATAAGATATGCACGAACTAATTGCATTGTGGTGTCTGG
AACATGCCATTATCTGCGGCGCCCAGAGATGATTCATGGATTTATGTTAGAGATTTTCATTGTC
CTCACTGGTGCAGGCAGCTTAATCACATATCGTAGCAGTCGCACTCATTCTGTGCTCATAACGA
GGAAATGAATTCATCCTTGTTTAACCCCGTTTGGATTGGAGAAACGATACAACTTCAGCCTGGA
TGACCTCAAAGATGTTGCCAAAGGCTACGACTGCTTCATCAAGGAAGATGTTCTTTGTACAACA
ATGGTAAGGAAGAGAAGTGAGGAAGACGAGTTTTGTCACACTGATTTCACGTAAGATATAAGAG
AAAAGATGTTAAGCTTAGGGGGTTCAAAGTTGCCTTTTAAAGCTCCAATATATATAGAACCAAA
TTGCATTTCATTTGCTGTTTATAAAAACAGCCCAGTCCAACATAGAACGAATCCGTGTACACTC
CATAATAGTTATATAGAGGAGCAGAAAAAATGACTTTCAAATTAAAAACAAAACCACAAGGAAC
AATAAGAAAAAAGATGCTTCCTAAAAATTGTTTTCGAAAAGGAAGAATTAACAATATAGATTTT
TTCCGGGAATAATAGCGAAACCAGAAAAAGAGGTTCCACTAGGTAAATCAAAAAGAGTTAAGAA
CAAAATCGATACAACACCATCTCTCTCTCGTCATTCATTTAGGTACTACCTTCCGCGGGATTCT
CAGTCTCCATTGGTTCGGCAGAAGCTGGTTGCTCTGGCTCACTCTTGCCCTCATCCGCCTGCTC
ACCTCCCTTGGCTTGTGGTGCCTCTGCTTTAGCCACCGGCTTTGGTTTGGTCATTATAGGCCTG
CAAAACCTGTAAAACATCCATAGCTGGTTCACTCTCTATTATCAGATTTAGCATTTCTTTTAAA
AGACAAAGACACAAGGAGCCTTGCTTACTTGTCCAATGCCTCTGCCTTGCTTTTAACGTCAGCT
GACAAGAGAGCCGGTGTGGCATACTTGGGAAGTGTGTCCTGCTGCTGCTGCTTTCCCCGCAGCC
ATGCTTCTGCTTCCACACACTCGTTCAAAACCTTAATCATTTCACAACAACAAAACATCAAACA
ATTTCCCCAAGCCTGAGAAATTTAAGATTTTTTTTGTGCTTCCAAGATTGAGCCAAATTATTAC
CTTTTGCTTCTCTGCCAATTCAATGTGATCAAACTTGGGATCAGTAGACATAGCTGCCTCTCTG
TAGCTGTTAATACAGTAACCAAGCTGATCAATGACCGACCCTCTTTCCAATGACTCCTTGTAAC
GCACTTCAACAGGGTCACCCACCTGCAAAATATTAATCCCACTCCTCTGTTAAAACATTATCCT
GAAATATGATTTCTTCCTGCACAATATAAAGTGTCATCATATGCATGCATTACCTTCTTGAGCT
CCTCGAGCTTCGCAACATAAACACCTTTGGTCTCATCTTCCCCATCTTCATACAACCAATCCTC
AACTTCCTGCAGATTCGCCAGGAATGCTTCCCTCTCCGAGTCAGTGATATATTCCTGGTATTTG
TCACTCAGCTGAAAACAAGACACGTTAGTACCCAATACTCACAACTTTACATATGCATACTGCC
AATGAAAAGACGAAATAAAGATTCTCACTTTGTTCCGCATATCATAAACATAAGACTCAACAGC
ATTCTTCCGGTCCTTGGTCTCTTCCATAACTCTGTCTTGCAAAGCCATCTCAAATTCCTTCTCC
ACTGCCTTTTCGACCTCCACAGTTTTCAAGGCACCATAGACCAATTCAGACAGTGGTACATTTG
TTTTCTTCACCTTCTTCTTTGGAGCCTCAGCCTGCACAATCCATTAATAAGTATCCATAATTAT
TTGATGTTCACAAGCGAATAGCAAGCAGTATCAGTTAAGAGAGAAACTAGCCTTTGAATCAGTT
TCCATTTGCACCGGCTTCTCAGCAGACTCTGGAACACCATTGTCAGTACCAGTTGCATCACTGG
TGTCTTTGGCGTCCTGCATGTTTACATCACAGTCTCCAGAAGCAGGAGCTGCCTCAGCAGAAGC
TTTGTCAGAGTCCATCTTAGTAGTTTCCTCTGAATGTTCTTTTGTGACCGGAACTTCAACTTCT
TCCTCTTCCAAAAGCTGCAATTAGGGGGGAGAAAACAATTAACATAAATTAAAGGATTCCCAAG
TTCATAAGGGGAAGGCACGACTCTAGATGATCAATTTGTAATCAGTTACTAGAGAGAATGAGCC
TTTAAATAGTTCATGTAGCGAAACTTACAGTTGCAGATTCAACTGAGACGATTCCATGAAGGTT
CAATCTCACTTTCACTTTAAGCTTTGCCCTCTCGCCTTTTGATGACTGGAACGGACCAATCTAC
AAAAAGGAGATCAACCATTAGAAACAAGAGCACTACAGTTATACATAGTCATGACATTGGGAGA
AAGATCAAACCGTGTATGTGCTGATTTTTGGAGGTGCTTGCAAATCGTTCACATCACTGTACTG
CACATCAACAGAGAATGTTCCAGAACGATAAAACGTTAGAGCCTTGACACTAGGAATGGGATTT
CCTTTGGGAAAAACAATGGTGCTCTGCTGATTCTCAGCTCCTCCATTTTGAGCTTCAGAAGCTG
CTCCTTTCCAAGCGAGAGAAATTGAGAAAGGGAAGCTCTCATGAAC
Conservation Information
Conserved circRNAs NA
PMCS 1.141825525
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017