Detail information of 1_circ_ag.5


General Information
CircRNA Name 1_circ_ag.5
ID in PlantcircBase ath_circ_011142
Alias NA
Organism Arabidpsis thaliana
Position chr1: 30059655-30064646  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.6 1_circ_igg.7 AT1G79920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G79920_circ_g.9 AT1G79920_circ_g.10 AT1G79920_circ_g.11 1_circ_ag.12 1_circ_ag.13 AT1G79920_circ_g.14 1_circ_ag.15 AT1G79920_circ_g.16 AT1G79920_circ_g.17 AT1G79920_circ_g.18 AT1G79930_circ_g.1 AT1G79930_circ_g.2 AT1G79930_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCCCCATCTTCATACAACCAATCCTCAACTTCCTGCAGATTCGCCAGGAATGCTTCCCTCTC
CGAGTCAGTGATATATTCCTGGTATTTGTCACTCAGcttcttgagctcctcgagctttgcaaca
taaacacctttggtctcatcttccccatcttcatacaaccaatcctcaacttcctgcagattcg
ccaggaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTTGAGCTCCTCGAGCTTTGCAACATAAACACCTTTGGTCTCATCTTCCCCATCTTCATAC
AACCAATCCTCAACTTCCTGCAGATTCGCCAGGAATGCTTCCCTCTCCGAGTCAGTGATATATT
CTGGTATTTGTCACTCAGCTGAAAACAAGACACGTCAGTACTCAATACTCAAAACTTTACATAT
GCATACTGCCAATGAAAAGACGAAATAAAGATTTCTCACTTTGTTTCGCATATCATAAACATAA
GACTCAACAGCATTCTTCCGGTCCTTGGTCTCTTCCATAACTCTGTCTTGCAGAGCCATCTCAA
ATTCCTTCTCCACTGCCTTTTCAACTTCCACAGTTTTCAAGGCACCATAGACCAATTCTGACAG
TGGTACATTTGTTTTCTTCACCTTCTTCTTTGGAGCCTCTGCCTGCACAATCCAATAATAAAGT
ATCCATAATTATTTATTGTTCACAAGCGAATAGCAAACAGTATGAGGTAAGAGAGAAACTAGCC
TTTGAATCAGTTTCCATTTGCACCGGCTTCTCAGCAGACTCTGGAACACCATTGTCAGTACCAG
TTGCATCACTGGTATCTTTGGCGTCCTGCATGTTAACATCAGAGTCACCAGAAGCAGGAGCTGC
CTCGGCAGAAGCTTTGTCAGTGTCCATCTTAGCAGTTTCCTCTGATTGATCTTTTGTGACCGAT
ACTTCAACTTCTTCCTCTTCCAAAAGCTGCATTTAGGAGAGATAAAAGTGGATAAATTAACGAA
CCATAAGTGGCTAAGTTCATAAGGTAAGCCACGGTTCTGCATGATCAACTTGTAATCAGTTAAT
AGAGAGAATCGGCCTTTAAATAGTTCACGTAAAGAAACTTACAGTTGCTGATTCAACAGAGACA
ATTCCATGCAGGTTCAATCTAACTTTCACTTTCAGCTTTGCCCTCTCGCCTTTTGATGACTGGA
AGGGACCAATCTACAAAAAGGAGATCCACCATTAGAAACAAGAGCACTACAGTCATACATAGTC
TTGACATTGGGCAAAGATCAAACCGTGTATGTGCTGATTTTAGGAGGTGCTTGCAAATCGTTCA
CATCACTGTACTGCACATCAATAGAGAATGTTCCAGAACGATAAAATGTTAGAGCCTTGACACT
AGGAATAGGATTTCCTTTCGGAAAAACAATAGTGCTCTGCTGGTTCTCAGTGCCTCCATTTTGA
GCATCAGTCGCTGCTCCTTTCCAAGCAAGCGATATTGAGAAAGGGAAGCTCTCATGAACCTAAG
AGAACAAAAAATAAATCATAATATGACTAGTCAGATAACCTGGAGTATAACAGTTCTCGAGTTG
CTTACAAGTACATTAAAATAACGACATTTACTTAAGCATAGATATGCACAAATTACCTGGAATT
CGCGAACTTTAAAGGTCGGACTGAGAATGGCACACTGCAAGGCACATCCCCTCGACACACACTC
ACTTGCATTCATTGTACGCCTGGGCTCCTTACCAAAAAACTCAGTTAGAATCTTGATCATAGCA
GGGACACGAGAGCCAGAGCCGACAACCTCGACCATATGTACATCTTCAACAGTGAGGCCCGCAT
CAGAGAGAGCTTTCTCTAAAGGCCTCTTAACACGCTCCAAAATCGGGATGCTGATCTCTTCAAA
CTCTTCCCTCTTGATGACACCCCTAACATCTTTCTCAGCCATCAAACACTCGATATTCAATGGT
GCCATAGGATTAGCGCTTAGAACCTTTTTCAGTTTCTCGCATGTAGCGCGGAGCCTGAGAGAAG
CCTTAGCATTCTGGGAGACGTCAATCTTGTACTCGTCCTTGAACTTAGCAGCAAAATGATTGAA
AAGAACTTCATCAAAATCCCTTCCCCCAAGGGAGCGATCGAAAGCGTGAGACAAGATTTTGAGC
TGTCCTTTTTTGAAGCCTGCAATACAGACTTGCATGCTTGCGTGTCCAATGTCAATGAATGCAA
CATTGAGCTGGTCATTCTCTGGCAGATCTGTCTTATAAATTCCGTATGCCAAAGCCGTAGCTGT
AGTCTCATGGATCAAGTGCAAGGGATGCAAGCCTGCAATTGTGGCAGCATCGAGAACAGCCCTA
CGCTGGAGGTCGGTAAAGTAAACAGGAATACCAATACAGCAGTCGACCACAGCTGTATTCAAAT
TCTTCTCAGCAATACCTTTCAAGTTGGACAACATCATACCCATGACCTGAGTCGGGGTAAAGGC
TCTAATCTCTCCCAAATAATTAGCATGGATCAAAGGATAGCCATCAGGGCCTTCAGTGACAGAA
AAGGGAAGGGATTTGATATCCCTTTGAAGCTCAGGGTCGGAAAACTGGCGACCAATTAAGCGCT
TGATTTGTGAGATGGAGTTTTTGGGGTTCATCATGGTAGAAGCAGCTCCAGCAGTACCGATGAA
GCGCTGCTTGTCACCAAAGCAAACGATAGCCGGAGTCTCGCGATTTGACTCATCATTAAGCACG
ACGTCGATACCTCTTTGCCTTGCAACAGCAACAAGGCAATTCTCGTTTCCAAAATCAAAACCAA
CTACACTCATTGTTAGGCTTTGTGTTCTTCAGTACTGGGGCGTCCCACGTGTTCGATAGCAACC
TTATAGAACAAAAAAAAGAAAAACACTATCAGATAGCGATCGAAGCAGACTAGTCTTGAGCTCG
AGAGATTACAGGAGATGACGAATTGGCGGTAACTCAGGCCAGGTAGCCTTAAACCATCGTATTA
CTAAACCTAAAATAAAACCACCAGTTTGGGTTTACATCAACAATACATACAACGAAGATTGGTG
GAGTTTGAAACTAAAATACAAATCCGGAAGCAGCGAAAGCAGAAGATTCATATTGAAACACAAG
TACGAGGAACAAGTAATCTGGCAACAAGAAATAAATAAAACCTAAAAGTGAGGAAAAAGAGAAG
CATCAGATCTAGAAGATCTGCAACTAGAGCATACCTGGATCGCGAGAGGGGTTCGCGTTCTGGA
AGCTTCCACCGAAATCTGGGTGAAGGTGAGAAATCTGTAATCGTGTCGCAGCCAAAAAGTGAAG
AGGAAGGGAGAAGAGCTTCTTTTATAAAGGAAGAGCAAGAGAGAAGAGGTTTTAATTAAGGAGC
AGACACCACCACAGGGTTTGGGTTCCTCTGGAATGTTCTTCTCCTTTCCTTTTTTTTTTTTATT
TTAAAAACACTTTCATTTCCTTTTTATTTTTGTGATATTTTTGCCTAAATTATTTATTTATTGC
CTTTTTTTTTCTTAGGTTTTTTTTTTTTATCCCAGTGTTTTTGTATATTTTTATTCGAGTCTAC
ATATAATTATTTAAACCCAATGTATTTAAAATTAATAAAATTATTATAGAGAAGTGGCTGGTGT
TATCAGAATTTGTGGTACATAAGATATGCACGAACTAATTGCATTGTGGTGTCTGGAACATGCC
ATTATCTGCGGCGCCCAGAGATGATTCATGGATTTATGTTAGAGATTTTCATTGTCCTCACTGG
TGCAGGCAGCTTAATCACATATCGTAGCAGTCGCACTCATTCTGTGCTCATAACGAGGAAATGA
ATTCATCCTTGTTTAACCCCGTTTGGATTGGAGAAACGATACAACTTCAGCCTGGATGACCTCA
AAGATGTTGCCAAAGGCTACGACTGCTTCATCAAGGAAGATGTTCTTTGTACAACAATGGTAAG
GAAGAGAAGTGAGGAAGACGAGTTTTGTCACACTGATTTCACGTAAGATATAAGAGAAAAGATG
TTAAGCTTAGGGGGTTCAAAGTTGCCTTTTAAAGCTCCAATATATATAGAACCAAATTGCATTT
CATTTGCTGTTTATAAAAACAGCCCAGTCCAACATAGAACGAATCCGTGTACACTCCATAATAG
TTATATAGAGGAGCAGAAAAAATGACTTTCAAATTAAAAACAAAACCACAAGGAACAATAAGAA
AAAAGATGCTTCCTAAAAATTGTTTTCGAAAAGGAAGAATTAACAATATAGATTTTTTCCGGGA
ATAATAGCGAAACCAGAAAAAGAGGTTCCACTAGGTAAATCAAAAAGAGTTAAGAACAAAATCG
ATACAACACCATCTCTCTCTCGTCATTCATTTAGGTACTACCTTCCGCGGGATTCTCAGTCTCC
ATTGGTTCGGCAGAAGCTGGTTGCTCTGGCTCACTCTTGCCCTCATCCGCCTGCTCACCTCCCT
TGGCTTGTGGTGCCTCTGCTTTAGCCACCGGCTTTGGTTTGGTCATTATAGGCCTGCAAAACCT
GTAAAACATCCATAGCTGGTTCACTCTCTATTATCAGATTTAGCATTTCTTTTAAAAGACAAAG
ACACAAGGAGCCTTGCTTACTTGTCCAATGCCTCTGCCTTGCTTTTAACGTCAGCTGACAAGAG
AGCCGGTGTGGCATACTTGGGAAGTGTGTCCTGCTGCTGCTGCTTTCCCCGCAGCCATGCTTCT
GCTTCCACACACTCGTTCAAAACCTTAATCATTTCACAACAACAAAACATCAAACAATTTCCCC
AAGCCTGAGAAATTTAAGATTTTTTTTGTGCTTCCAAGATTGAGCCAAATTATTACCTTTTGCT
TCTCTGCCAATTCAATGTGATCAAACTTGGGATCAGTAGACATAGCTGCCTCTCTGTAGCTGTT
AATACAGTAACCAAGCTGATCAATGACCGACCCTCTTTCCAATGACTCCTTGTAACGCACTTCA
ACAGGGTCACCCACCTGCAAAATATTAATCCCACTCCTCTGTTAAAACATTATCCTGAAATATG
ATTTCTTCCTGCACAATATAAAGTGTCATCATATGCATGCATTACCTTCTTGAGCTCCTCGAGC
TTCGCAACATAAACACCTTTGGTCTCATCTTCCCCATCTTCATACAACCAATCCTCAACTTCCT
GCAGATTCGCCAGGAATGCTTCCCTCTCCGAGTCAGTGATATATTCCTGGTATTTGTCACTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.227716037
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017