Detail information of 1_circ_ag.13


General Information
CircRNA Name 1_circ_ag.13
ID in PlantcircBase ath_circ_011150
Alias NA
Organism Arabidpsis thaliana
Position chr1: 30060702-30065466  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.6 1_circ_igg.7 AT1G79920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G79920_circ_g.9 AT1G79920_circ_g.10 AT1G79920_circ_g.11 1_circ_ag.12 AT1G79920_circ_g.14 1_circ_ag.15 AT1G79920_circ_g.16 AT1G79920_circ_g.17 AT1G79920_circ_g.18 AT1G79930_circ_g.1 AT1G79930_circ_g.2 AT1G79930_circ_g.3
Support reads 10
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACAGTTGCAGATTCAACTGAGACGATTCCATGAAGGTTCAATCTCACTTTCACTTTAAGCTT
TGCCCTCTCGCCTTTTGATGACTGGAACGGACCAATcgtgtatgtgctgattttaggaggtgct
tgcaaatcgttcacatcactgtactgcacatcaatagagaatgttccagaacgataaaatgtta
gagccttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTGTATGTGCTGATTTTAGGAGGTGCTTGCAAATCGTTCACATCACTGTACTGCACATCAATA
GAGAATGTTCCAGAACGATAAAATGTTAGAGCCTTGACACTAGGAATAGGATTTCCTTTCGGAA
AAACAATAGTGCTCTGCTGGTTCTCAGTGCCTCCATTTTGAGCATCAGTCGCTGCTCCTTTCCA
AGCAAGCGATATTGAGAAAGGGAAGCTCTCATGAACCTAAGAGAACAAAAAATAAATCATAATA
TGACTAGTCAGATAACCTGGAGTATAACAGTTCTCGAGTTGCTTACAAGTACATTAAAATAACG
ACATTTACTTAAGCATAGATATGCACAAATTACCTGGAATTCGCGAACTTTAAAGGTCGGACTG
AGAATGGCACACTGCAAGGCACATCCCCTCGACACACACTCACTTGCATTCATTGTACGCCTGG
GCTCCTTACCAAAAAACTCAGTTAGAATCTTGATCATAGCAGGGACACGAGAGCCAGAGCCGAC
AACCTCGACCATATGTACATCTTCAACAGTGAGGCCCGCATCAGAGAGAGCTTTCTCTAAAGGC
CTCTTAACACGCTCCAAAATCGGGATGCTGATCTCTTCAAACTCTTCCCTCTTGATGACACCCC
TAACATCTTTCTCAGCCATCAAACACTCGATATTCAATGGTGCCATAGGATTAGCGCTTAGAAC
CTTTTTCAGTTTCTCGCATGTAGCGCGGAGCCTGAGAGAAGCCTTAGCATTCTGGGAGACGTCA
ATCTTGTACTCGTCCTTGAACTTAGCAGCAAAATGATTGAAAAGAACTTCATCAAAATCCCTTC
CCCCAAGGGAGCGATCGAAAGCGTGAGACAAGATTTTGAGCTGTCCTTTTTTGAAGCCTGCAAT
ACAGACTTGCATGCTTGCGTGTCCAATGTCAATGAATGCAACATTGAGCTGGTCATTCTCTGGC
AGATCTGTCTTATAAATTCCGTATGCCAAAGCCGTAGCTGTAGTCTCATGGATCAAGTGCAAGG
GATGCAAGCCTGCAATTGTGGCAGCATCGAGAACAGCCCTACGCTGGAGGTCGGTAAAGTAAAC
AGGAATACCAATACAGCAGTCGACCACAGCTGTATTCAAATTCTTCTCAGCAATACCTTTCAAG
TTGGACAACATCATACCCATGACCTGAGTCGGGGTAAAGGCTCTAATCTCTCCCAAATAATTAG
CATGGATCAAAGGATAGCCATCAGGGCCTTCAGTGACAGAAAAGGGAAGGGATTTGATATCCCT
TTGAAGCTCAGGGTCGGAAAACTGGCGACCAATTAAGCGCTTGATTTGTGAGATGGAGTTTTTG
GGGTTCATCATGGTAGAAGCAGCTCCAGCAGTACCGATGAAGCGCTGCTTGTCACCAAAGCAAA
CGATAGCCGGAGTCTCGCGATTTGACTCATCATTAAGCACGACGTCGATACCTCTTTGCCTTGC
AACAGCAACAAGGCAATTCTCGTTTCCAAAATCAAAACCAACTACACTCATTGTTAGGCTTTGT
GTTCTTCAGTACTGGGGCGTCCCACGTGTTCGATAGCAACCTTATAGAACAAAAAAAAGAAAAA
CACTATCAGATAGCGATCGAAGCAGACTAGTCTTGAGCTCGAGAGATTACAGGAGATGACGAAT
TGGCGGTAACTCAGGCCAGGTAGCCTTAAACCATCGTATTACTAAACCTAAAATAAAACCACCA
GTTTGGGTTTACATCAACAATACATACAACGAAGATTGGTGGAGTTTGAAACTAAAATACAAAT
CCGGAAGCAGCGAAAGCAGAAGATTCATATTGAAACACAAGTACGAGGAACAAGTAATCTGGCA
ACAAGAAATAAATAAAACCTAAAAGTGAGGAAAAAGAGAAGCATCAGATCTAGAAGATCTGCAA
CTAGAGCATACCTGGATCGCGAGAGGGGTTCGCGTTCTGGAAGCTTCCACCGAAATCTGGGTGA
AGGTGAGAAATCTGTAATCGTGTCGCAGCCAAAAAGTGAAGAGGAAGGGAGAAGAGCTTCTTTT
ATAAAGGAAGAGCAAGAGAGAAGAGGTTTTAATTAAGGAGCAGACACCACCACAGGGTTTGGGT
TCCTCTGGAATGTTCTTCTCCTTTCCTTTTTTTTTTTTATTTTAAAAACACTTTCATTTCCTTT
TTATTTTTGTGATATTTTTGCCTAAATTATTTATTTATTGCCTTTTTTTTTCTTAGGTTTTTTT
TTTTTATCCCAGTGTTTTTGTATATTTTTATTCGAGTCTACATATAATTATTTAAACCCAATGT
ATTTAAAATTAATAAAATTATTATAGAGAAGTGGCTGGTGTTATCAGAATTTGTGGTACATAAG
ATATGCACGAACTAATTGCATTGTGGTGTCTGGAACATGCCATTATCTGCGGCGCCCAGAGATG
ATTCATGGATTTATGTTAGAGATTTTCATTGTCCTCACTGGTGCAGGCAGCTTAATCACATATC
GTAGCAGTCGCACTCATTCTGTGCTCATAACGAGGAAATGAATTCATCCTTGTTTAACCCCGTT
TGGATTGGAGAAACGATACAACTTCAGCCTGGATGACCTCAAAGATGTTGCCAAAGGCTACGAC
TGCTTCATCAAGGAAGATGTTCTTTGTACAACAATGGTAAGGAAGAGAAGTGAGGAAGACGAGT
TTTGTCACACTGATTTCACGTAAGATATAAGAGAAAAGATGTTAAGCTTAGGGGGTTCAAAGTT
GCCTTTTAAAGCTCCAATATATATAGAACCAAATTGCATTTCATTTGCTGTTTATAAAAACAGC
CCAGTCCAACATAGAACGAATCCGTGTACACTCCATAATAGTTATATAGAGGAGCAGAAAAAAT
GACTTTCAAATTAAAAACAAAACCACAAGGAACAATAAGAAAAAAGATGCTTCCTAAAAATTGT
TTTCGAAAAGGAAGAATTAACAATATAGATTTTTTCCGGGAATAATAGCGAAACCAGAAAAAGA
GGTTCCACTAGGTAAATCAAAAAGAGTTAAGAACAAAATCGATACAACACCATCTCTCTCTCGT
CATTCATTTAGGTACTACCTTCCGCGGGATTCTCAGTCTCCATTGGTTCGGCAGAAGCTGGTTG
CTCTGGCTCACTCTTGCCCTCATCCGCCTGCTCACCTCCCTTGGCTTGTGGTGCCTCTGCTTTA
GCCACCGGCTTTGGTTTGGTCATTATAGGCCTGCAAAACCTGTAAAACATCCATAGCTGGTTCA
CTCTCTATTATCAGATTTAGCATTTCTTTTAAAAGACAAAGACACAAGGAGCCTTGCTTACTTG
TCCAATGCCTCTGCCTTGCTTTTAACGTCAGCTGACAAGAGAGCCGGTGTGGCATACTTGGGAA
GTGTGTCCTGCTGCTGCTGCTTTCCCCGCAGCCATGCTTCTGCTTCCACACACTCGTTCAAAAC
CTTAATCATTTCACAACAACAAAACATCAAACAATTTCCCCAAGCCTGAGAAATTTAAGATTTT
TTTTGTGCTTCCAAGATTGAGCCAAATTATTACCTTTTGCTTCTCTGCCAATTCAATGTGATCA
AACTTGGGATCAGTAGACATAGCTGCCTCTCTGTAGCTGTTAATACAGTAACCAAGCTGATCAA
TGACCGACCCTCTTTCCAATGACTCCTTGTAACGCACTTCAACAGGGTCACCCACCTGCAAAAT
ATTAATCCCACTCCTCTGTTAAAACATTATCCTGAAATATGATTTCTTCCTGCACAATATAAAG
TGTCATCATATGCATGCATTACCTTCTTGAGCTCCTCGAGCTTCGCAACATAAACACCTTTGGT
CTCATCTTCCCCATCTTCATACAACCAATCCTCAACTTCCTGCAGATTCGCCAGGAATGCTTCC
CTCTCCGAGTCAGTGATATATTCCTGGTATTTGTCACTCAGCTGAAAACAAGACACGTTAGTAC
CCAATACTCACAACTTTACATATGCATACTGCCAATGAAAAGACGAAATAAAGATTCTCACTTT
GTTCCGCATATCATAAACATAAGACTCAACAGCATTCTTCCGGTCCTTGGTCTCTTCCATAACT
CTGTCTTGCAAAGCCATCTCAAATTCCTTCTCCACTGCCTTTTCGACCTCCACAGTTTTCAAGG
CACCATAGACCAATTCAGACAGTGGTACATTTGTTTTCTTCACCTTCTTCTTTGGAGCCTCAGC
CTGCACAATCCATTAATAAGTATCCATAATTATTTGATGTTCACAAGCGAATAGCAAGCAGTAT
CAGTTAAGAGAGAAACTAGCCTTTGAATCAGTTTCCATTTGCACCGGCTTCTCAGCAGACTCTG
GAACACCATTGTCAGTACCAGTTGCATCACTGGTGTCTTTGGCGTCCTGCATGTTTACATCACA
GTCTCCAGAAGCAGGAGCTGCCTCAGCAGAAGCTTTGTCAGAGTCCATCTTAGTAGTTTCCTCT
GAATGTTCTTTTGTGACCGGAACTTCAACTTCTTCCTCTTCCAAAAGCTGCAATTAGGGGGGAG
AAAACAATTAACATAAATTAAAGGATTCCCAAGTTCATAAGGGGAAGGCACGACTCTAGATGAT
CAATTTGTAATCAGTTACTAGAGAGAATGAGCCTTTAAATAGTTCATGTAGCGAAACTTACAGT
TGCAGATTCAACTGAGACGATTCCATGAAGGTTCAATCTCACTTTCACTTTAAGCTTTGCCCTC
TCGCCTTTTGATGACTGGAACGGACCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.777415824
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017