Detail information of 1_circ_ag.12


General Information
CircRNA Name 1_circ_ag.12
ID in PlantcircBase ath_circ_011149
Alias NA
Organism Arabidpsis thaliana
Position chr1: 30060529-30065228  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.6 1_circ_igg.7 AT1G79920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G79920_circ_g.9 AT1G79920_circ_g.10 AT1G79920_circ_g.11 1_circ_ag.13 AT1G79920_circ_g.14 1_circ_ag.15 AT1G79920_circ_g.16 AT1G79920_circ_g.17 AT1G79920_circ_g.18 AT1G79930_circ_g.1 AT1G79930_circ_g.2 AT1G79930_circ_g.3
Support reads 9
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGAGCTGCCTCAGCAGAAGCTTTGTCAGAGTCCATCTTAGTAGTTTCCTCTGAATGTTCTTT
TGTGACCGGAACTTCAACTTCTTCCTCTTCCAAAAGagttgctgattcaacagagacaattcca
tgcaggttcaatctaactttcactttcagctttgccctctcgccttttgatgactggaagggac
caatctac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTGCTGATTCAACAGAGACAATTCCATGCAGGTTCAATCTAACTTTCACTTTCAGCTTTGCC
CTCTCGCCTTTTGATGACTGGAAGGGACCAATCTACAAAAAGGAGATCCACCATTAGAAACAAG
AGCACTACAGTCATACATAGTCTTGACATTGGGCAAAGATCAAACCGTGTATGTGCTGATTTTA
GGAGGTGCTTGCAAATCGTTCACATCACTGTACTGCACATCAATAGAGAATGTTCCAGAACGAT
AAAATGTTAGAGCCTTGACACTAGGAATAGGATTTCCTTTCGGAAAAACAATAGTGCTCTGCTG
GTTCTCAGTGCCTCCATTTTGAGCATCAGTCGCTGCTCCTTTCCAAGCAAGCGATATTGAGAAA
GGGAAGCTCTCATGAACCTAAGAGAACAAAAAATAAATCATAATATGACTAGTCAGATAACCTG
GAGTATAACAGTTCTCGAGTTGCTTACAAGTACATTAAAATAACGACATTTACTTAAGCATAGA
TATGCACAAATTACCTGGAATTCGCGAACTTTAAAGGTCGGACTGAGAATGGCACACTGCAAGG
CACATCCCCTCGACACACACTCACTTGCATTCATTGTACGCCTGGGCTCCTTACCAAAAAACTC
AGTTAGAATCTTGATCATAGCAGGGACACGAGAGCCAGAGCCGACAACCTCGACCATATGTACA
TCTTCAACAGTGAGGCCCGCATCAGAGAGAGCTTTCTCTAAAGGCCTCTTAACACGCTCCAAAA
TCGGGATGCTGATCTCTTCAAACTCTTCCCTCTTGATGACACCCCTAACATCTTTCTCAGCCAT
CAAACACTCGATATTCAATGGTGCCATAGGATTAGCGCTTAGAACCTTTTTCAGTTTCTCGCAT
GTAGCGCGGAGCCTGAGAGAAGCCTTAGCATTCTGGGAGACGTCAATCTTGTACTCGTCCTTGA
ACTTAGCAGCAAAATGATTGAAAAGAACTTCATCAAAATCCCTTCCCCCAAGGGAGCGATCGAA
AGCGTGAGACAAGATTTTGAGCTGTCCTTTTTTGAAGCCTGCAATACAGACTTGCATGCTTGCG
TGTCCAATGTCAATGAATGCAACATTGAGCTGGTCATTCTCTGGCAGATCTGTCTTATAAATTC
CGTATGCCAAAGCCGTAGCTGTAGTCTCATGGATCAAGTGCAAGGGATGCAAGCCTGCAATTGT
GGCAGCATCGAGAACAGCCCTACGCTGGAGGTCGGTAAAGTAAACAGGAATACCAATACAGCAG
TCGACCACAGCTGTATTCAAATTCTTCTCAGCAATACCTTTCAAGTTGGACAACATCATACCCA
TGACCTGAGTCGGGGTAAAGGCTCTAATCTCTCCCAAATAATTAGCATGGATCAAAGGATAGCC
ATCAGGGCCTTCAGTGACAGAAAAGGGAAGGGATTTGATATCCCTTTGAAGCTCAGGGTCGGAA
AACTGGCGACCAATTAAGCGCTTGATTTGTGAGATGGAGTTTTTGGGGTTCATCATGGTAGAAG
CAGCTCCAGCAGTACCGATGAAGCGCTGCTTGTCACCAAAGCAAACGATAGCCGGAGTCTCGCG
ATTTGACTCATCATTAAGCACGACGTCGATACCTCTTTGCCTTGCAACAGCAACAAGGCAATTC
TCGTTTCCAAAATCAAAACCAACTACACTCATTGTTAGGCTTTGTGTTCTTCAGTACTGGGGCG
TCCCACGTGTTCGATAGCAACCTTATAGAACAAAAAAAAGAAAAACACTATCAGATAGCGATCG
AAGCAGACTAGTCTTGAGCTCGAGAGATTACAGGAGATGACGAATTGGCGGTAACTCAGGCCAG
GTAGCCTTAAACCATCGTATTACTAAACCTAAAATAAAACCACCAGTTTGGGTTTACATCAACA
ATACATACAACGAAGATTGGTGGAGTTTGAAACTAAAATACAAATCCGGAAGCAGCGAAAGCAG
AAGATTCATATTGAAACACAAGTACGAGGAACAAGTAATCTGGCAACAAGAAATAAATAAAACC
TAAAAGTGAGGAAAAAGAGAAGCATCAGATCTAGAAGATCTGCAACTAGAGCATACCTGGATCG
CGAGAGGGGTTCGCGTTCTGGAAGCTTCCACCGAAATCTGGGTGAAGGTGAGAAATCTGTAATC
GTGTCGCAGCCAAAAAGTGAAGAGGAAGGGAGAAGAGCTTCTTTTATAAAGGAAGAGCAAGAGA
GAAGAGGTTTTAATTAAGGAGCAGACACCACCACAGGGTTTGGGTTCCTCTGGAATGTTCTTCT
CCTTTCCTTTTTTTTTTTTATTTTAAAAACACTTTCATTTCCTTTTTATTTTTGTGATATTTTT
GCCTAAATTATTTATTTATTGCCTTTTTTTTTCTTAGGTTTTTTTTTTTTATCCCAGTGTTTTT
GTATATTTTTATTCGAGTCTACATATAATTATTTAAACCCAATGTATTTAAAATTAATAAAATT
ATTATAGAGAAGTGGCTGGTGTTATCAGAATTTGTGGTACATAAGATATGCACGAACTAATTGC
ATTGTGGTGTCTGGAACATGCCATTATCTGCGGCGCCCAGAGATGATTCATGGATTTATGTTAG
AGATTTTCATTGTCCTCACTGGTGCAGGCAGCTTAATCACATATCGTAGCAGTCGCACTCATTC
TGTGCTCATAACGAGGAAATGAATTCATCCTTGTTTAACCCCGTTTGGATTGGAGAAACGATAC
AACTTCAGCCTGGATGACCTCAAAGATGTTGCCAAAGGCTACGACTGCTTCATCAAGGAAGATG
TTCTTTGTACAACAATGGTAAGGAAGAGAAGTGAGGAAGACGAGTTTTGTCACACTGATTTCAC
GTAAGATATAAGAGAAAAGATGTTAAGCTTAGGGGGTTCAAAGTTGCCTTTTAAAGCTCCAATA
TATATAGAACCAAATTGCATTTCATTTGCTGTTTATAAAAACAGCCCAGTCCAACATAGAACGA
ATCCGTGTACACTCCATAATAGTTATATAGAGGAGCAGAAAAAATGACTTTCAAATTAAAAACA
AAACCACAAGGAACAATAAGAAAAAAGATGCTTCCTAAAAATTGTTTTCGAAAAGGAAGAATTA
ACAATATAGATTTTTTCCGGGAATAATAGCGAAACCAGAAAAAGAGGTTCCACTAGGTAAATCA
AAAAGAGTTAAGAACAAAATCGATACAACACCATCTCTCTCTCGTCATTCATTTAGGTACTACC
TTCCGCGGGATTCTCAGTCTCCATTGGTTCGGCAGAAGCTGGTTGCTCTGGCTCACTCTTGCCC
TCATCCGCCTGCTCACCTCCCTTGGCTTGTGGTGCCTCTGCTTTAGCCACCGGCTTTGGTTTGG
TCATTATAGGCCTGCAAAACCTGTAAAACATCCATAGCTGGTTCACTCTCTATTATCAGATTTA
GCATTTCTTTTAAAAGACAAAGACACAAGGAGCCTTGCTTACTTGTCCAATGCCTCTGCCTTGC
TTTTAACGTCAGCTGACAAGAGAGCCGGTGTGGCATACTTGGGAAGTGTGTCCTGCTGCTGCTG
CTTTCCCCGCAGCCATGCTTCTGCTTCCACACACTCGTTCAAAACCTTAATCATTTCACAACAA
CAAAACATCAAACAATTTCCCCAAGCCTGAGAAATTTAAGATTTTTTTTGTGCTTCCAAGATTG
AGCCAAATTATTACCTTTTGCTTCTCTGCCAATTCAATGTGATCAAACTTGGGATCAGTAGACA
TAGCTGCCTCTCTGTAGCTGTTAATACAGTAACCAAGCTGATCAATGACCGACCCTCTTTCCAA
TGACTCCTTGTAACGCACTTCAACAGGGTCACCCACCTGCAAAATATTAATCCCACTCCTCTGT
TAAAACATTATCCTGAAATATGATTTCTTCCTGCACAATATAAAGTGTCATCATATGCATGCAT
TACCTTCTTGAGCTCCTCGAGCTTCGCAACATAAACACCTTTGGTCTCATCTTCCCCATCTTCA
TACAACCAATCCTCAACTTCCTGCAGATTCGCCAGGAATGCTTCCCTCTCCGAGTCAGTGATAT
ATTCCTGGTATTTGTCACTCAGCTGAAAACAAGACACGTTAGTACCCAATACTCACAACTTTAC
ATATGCATACTGCCAATGAAAAGACGAAATAAAGATTCTCACTTTGTTCCGCATATCATAAACA
TAAGACTCAACAGCATTCTTCCGGTCCTTGGTCTCTTCCATAACTCTGTCTTGCAAAGCCATCT
CAAATTCCTTCTCCACTGCCTTTTCGACCTCCACAGTTTTCAAGGCACCATAGACCAATTCAGA
CAGTGGTACATTTGTTTTCTTCACCTTCTTCTTTGGAGCCTCAGCCTGCACAATCCATTAATAA
GTATCCATAATTATTTGATGTTCACAAGCGAATAGCAAGCAGTATCAGTTAAGAGAGAAACTAG
CCTTTGAATCAGTTTCCATTTGCACCGGCTTCTCAGCAGACTCTGGAACACCATTGTCAGTACC
AGTTGCATCACTGGTGTCTTTGGCGTCCTGCATGTTTACATCACAGTCTCCAGAAGCAGGAGCT
GCCTCAGCAGAAGCTTTGTCAGAGTCCATCTTAGTAGTTTCCTCTGAATGTTCTTTTGTGACCG
GAACTTCAACTTCTTCCTCTTCCAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.712454772
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017