Detail information of 1_circ_ag.6


General Information
CircRNA Name 1_circ_ag.6
ID in PlantcircBase ath_circ_011143
Alias NA
Organism Arabidpsis thaliana
Position chr1: 30059877-30064637  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.6 1_circ_igg.7 AT1G79920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.7 1_circ_ag.8 AT1G79920_circ_g.9 AT1G79920_circ_g.10 AT1G79920_circ_g.11 1_circ_ag.12 1_circ_ag.13 AT1G79920_circ_g.14 1_circ_ag.15 AT1G79920_circ_g.16 AT1G79920_circ_g.17 AT1G79920_circ_g.18 AT1G79930_circ_g.1 AT1G79930_circ_g.2 AT1G79930_circ_g.3
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTCTCATCTTCCCCATCTTCATACAACCAATCCTCAACTTCCTGCAGATTCGCCAGGAATGC
TTCCCTCTCCGAGTCAGTGATATATTCCTGGTATTTatttctcactttgtttcgcatatcataa
acataagactcaacagcattcttccggtccttggtctcttccataactctgtcttgcagagcca
tctcaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTCTCACTTTGTTTCGCATATCATAAACATAAGACTCAACAGCATTCTTCCGGTCCTTGGTC
TCTTCCATAACTCTGTCTTGCAGAGCCATCTCAAATTCCTTCTCCACTGCCTTTTCAACTTCCA
CAGTTTTCAAGGCACCATAGACCAATTCTGACAGTGGTACATTTGTTTTCTTCACCTTCTTCTT
TGGAGCCTCTGCCTGCACAATCCAATAATAAAGTATCCATAATTATTTATTGTTCACAAGCGAA
TAGCAAACAGTATGAGGTAAGAGAGAAACTAGCCTTTGAATCAGTTTCCATTTGCACCGGCTTC
TCAGCAGACTCTGGAACACCATTGTCAGTACCAGTTGCATCACTGGTATCTTTGGCGTCCTGCA
TGTTAACATCAGAGTCACCAGAAGCAGGAGCTGCCTCGGCAGAAGCTTTGTCAGTGTCCATCTT
AGCAGTTTCCTCTGATTGATCTTTTGTGACCGATACTTCAACTTCTTCCTCTTCCAAAAGCTGC
ATTTAGGAGAGATAAAAGTGGATAAATTAACGAACCATAAGTGGCTAAGTTCATAAGGTAAGCC
ACGGTTCTGCATGATCAACTTGTAATCAGTTAATAGAGAGAATCGGCCTTTAAATAGTTCACGT
AAAGAAACTTACAGTTGCTGATTCAACAGAGACAATTCCATGCAGGTTCAATCTAACTTTCACT
TTCAGCTTTGCCCTCTCGCCTTTTGATGACTGGAAGGGACCAATCTACAAAAAGGAGATCCACC
ATTAGAAACAAGAGCACTACAGTCATACATAGTCTTGACATTGGGCAAAGATCAAACCGTGTAT
GTGCTGATTTTAGGAGGTGCTTGCAAATCGTTCACATCACTGTACTGCACATCAATAGAGAATG
TTCCAGAACGATAAAATGTTAGAGCCTTGACACTAGGAATAGGATTTCCTTTCGGAAAAACAAT
AGTGCTCTGCTGGTTCTCAGTGCCTCCATTTTGAGCATCAGTCGCTGCTCCTTTCCAAGCAAGC
GATATTGAGAAAGGGAAGCTCTCATGAACCTAAGAGAACAAAAAATAAATCATAATATGACTAG
TCAGATAACCTGGAGTATAACAGTTCTCGAGTTGCTTACAAGTACATTAAAATAACGACATTTA
CTTAAGCATAGATATGCACAAATTACCTGGAATTCGCGAACTTTAAAGGTCGGACTGAGAATGG
CACACTGCAAGGCACATCCCCTCGACACACACTCACTTGCATTCATTGTACGCCTGGGCTCCTT
ACCAAAAAACTCAGTTAGAATCTTGATCATAGCAGGGACACGAGAGCCAGAGCCGACAACCTCG
ACCATATGTACATCTTCAACAGTGAGGCCCGCATCAGAGAGAGCTTTCTCTAAAGGCCTCTTAA
CACGCTCCAAAATCGGGATGCTGATCTCTTCAAACTCTTCCCTCTTGATGACACCCCTAACATC
TTTCTCAGCCATCAAACACTCGATATTCAATGGTGCCATAGGATTAGCGCTTAGAACCTTTTTC
AGTTTCTCGCATGTAGCGCGGAGCCTGAGAGAAGCCTTAGCATTCTGGGAGACGTCAATCTTGT
ACTCGTCCTTGAACTTAGCAGCAAAATGATTGAAAAGAACTTCATCAAAATCCCTTCCCCCAAG
GGAGCGATCGAAAGCGTGAGACAAGATTTTGAGCTGTCCTTTTTTGAAGCCTGCAATACAGACT
TGCATGCTTGCGTGTCCAATGTCAATGAATGCAACATTGAGCTGGTCATTCTCTGGCAGATCTG
TCTTATAAATTCCGTATGCCAAAGCCGTAGCTGTAGTCTCATGGATCAAGTGCAAGGGATGCAA
GCCTGCAATTGTGGCAGCATCGAGAACAGCCCTACGCTGGAGGTCGGTAAAGTAAACAGGAATA
CCAATACAGCAGTCGACCACAGCTGTATTCAAATTCTTCTCAGCAATACCTTTCAAGTTGGACA
ACATCATACCCATGACCTGAGTCGGGGTAAAGGCTCTAATCTCTCCCAAATAATTAGCATGGAT
CAAAGGATAGCCATCAGGGCCTTCAGTGACAGAAAAGGGAAGGGATTTGATATCCCTTTGAAGC
TCAGGGTCGGAAAACTGGCGACCAATTAAGCGCTTGATTTGTGAGATGGAGTTTTTGGGGTTCA
TCATGGTAGAAGCAGCTCCAGCAGTACCGATGAAGCGCTGCTTGTCACCAAAGCAAACGATAGC
CGGAGTCTCGCGATTTGACTCATCATTAAGCACGACGTCGATACCTCTTTGCCTTGCAACAGCA
ACAAGGCAATTCTCGTTTCCAAAATCAAAACCAACTACACTCATTGTTAGGCTTTGTGTTCTTC
AGTACTGGGGCGTCCCACGTGTTCGATAGCAACCTTATAGAACAAAAAAAAGAAAAACACTATC
AGATAGCGATCGAAGCAGACTAGTCTTGAGCTCGAGAGATTACAGGAGATGACGAATTGGCGGT
AACTCAGGCCAGGTAGCCTTAAACCATCGTATTACTAAACCTAAAATAAAACCACCAGTTTGGG
TTTACATCAACAATACATACAACGAAGATTGGTGGAGTTTGAAACTAAAATACAAATCCGGAAG
CAGCGAAAGCAGAAGATTCATATTGAAACACAAGTACGAGGAACAAGTAATCTGGCAACAAGAA
ATAAATAAAACCTAAAAGTGAGGAAAAAGAGAAGCATCAGATCTAGAAGATCTGCAACTAGAGC
ATACCTGGATCGCGAGAGGGGTTCGCGTTCTGGAAGCTTCCACCGAAATCTGGGTGAAGGTGAG
AAATCTGTAATCGTGTCGCAGCCAAAAAGTGAAGAGGAAGGGAGAAGAGCTTCTTTTATAAAGG
AAGAGCAAGAGAGAAGAGGTTTTAATTAAGGAGCAGACACCACCACAGGGTTTGGGTTCCTCTG
GAATGTTCTTCTCCTTTCCTTTTTTTTTTTTATTTTAAAAACACTTTCATTTCCTTTTTATTTT
TGTGATATTTTTGCCTAAATTATTTATTTATTGCCTTTTTTTTTCTTAGGTTTTTTTTTTTTAT
CCCAGTGTTTTTGTATATTTTTATTCGAGTCTACATATAATTATTTAAACCCAATGTATTTAAA
ATTAATAAAATTATTATAGAGAAGTGGCTGGTGTTATCAGAATTTGTGGTACATAAGATATGCA
CGAACTAATTGCATTGTGGTGTCTGGAACATGCCATTATCTGCGGCGCCCAGAGATGATTCATG
GATTTATGTTAGAGATTTTCATTGTCCTCACTGGTGCAGGCAGCTTAATCACATATCGTAGCAG
TCGCACTCATTCTGTGCTCATAACGAGGAAATGAATTCATCCTTGTTTAACCCCGTTTGGATTG
GAGAAACGATACAACTTCAGCCTGGATGACCTCAAAGATGTTGCCAAAGGCTACGACTGCTTCA
TCAAGGAAGATGTTCTTTGTACAACAATGGTAAGGAAGAGAAGTGAGGAAGACGAGTTTTGTCA
CACTGATTTCACGTAAGATATAAGAGAAAAGATGTTAAGCTTAGGGGGTTCAAAGTTGCCTTTT
AAAGCTCCAATATATATAGAACCAAATTGCATTTCATTTGCTGTTTATAAAAACAGCCCAGTCC
AACATAGAACGAATCCGTGTACACTCCATAATAGTTATATAGAGGAGCAGAAAAAATGACTTTC
AAATTAAAAACAAAACCACAAGGAACAATAAGAAAAAAGATGCTTCCTAAAAATTGTTTTCGAA
AAGGAAGAATTAACAATATAGATTTTTTCCGGGAATAATAGCGAAACCAGAAAAAGAGGTTCCA
CTAGGTAAATCAAAAAGAGTTAAGAACAAAATCGATACAACACCATCTCTCTCTCGTCATTCAT
TTAGGTACTACCTTCCGCGGGATTCTCAGTCTCCATTGGTTCGGCAGAAGCTGGTTGCTCTGGC
TCACTCTTGCCCTCATCCGCCTGCTCACCTCCCTTGGCTTGTGGTGCCTCTGCTTTAGCCACCG
GCTTTGGTTTGGTCATTATAGGCCTGCAAAACCTGTAAAACATCCATAGCTGGTTCACTCTCTA
TTATCAGATTTAGCATTTCTTTTAAAAGACAAAGACACAAGGAGCCTTGCTTACTTGTCCAATG
CCTCTGCCTTGCTTTTAACGTCAGCTGACAAGAGAGCCGGTGTGGCATACTTGGGAAGTGTGTC
CTGCTGCTGCTGCTTTCCCCGCAGCCATGCTTCTGCTTCCACACACTCGTTCAAAACCTTAATC
ATTTCACAACAACAAAACATCAAACAATTTCCCCAAGCCTGAGAAATTTAAGATTTTTTTTGTG
CTTCCAAGATTGAGCCAAATTATTACCTTTTGCTTCTCTGCCAATTCAATGTGATCAAACTTGG
GATCAGTAGACATAGCTGCCTCTCTGTAGCTGTTAATACAGTAACCAAGCTGATCAATGACCGA
CCCTCTTTCCAATGACTCCTTGTAACGCACTTCAACAGGGTCACCCACCTGCAAAATATTAATC
CCACTCCTCTGTTAAAACATTATCCTGAAATATGATTTCTTCCTGCACAATATAAAGTGTCATC
ATATGCATGCATTACCTTCTTGAGCTCCTCGAGCTTCGCAACATAAACACCTTTGGTCTCATCT
TCCCCATCTTCATACAACCAATCCTCAACTTCCTGCAGATTCGCCAGGAATGCTTCCCTCTCCG
AGTCAGTGATATATTCCTGGTATTT
Conservation Information
Conserved circRNAs NA
PMCS 0.283303036
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017