Detail information of 1_circ_ag.7


General Information
CircRNA Name 1_circ_ag.7
ID in PlantcircBase ath_circ_011144
Alias NA
Organism Arabidpsis thaliana
Position chr1: 30059885-30064645  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method in-house script
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.6 1_circ_igg.7 AT1G79920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.8 AT1G79920_circ_g.9 AT1G79920_circ_g.10 AT1G79920_circ_g.11 1_circ_ag.12 1_circ_ag.13 AT1G79920_circ_g.14 1_circ_ag.15 AT1G79920_circ_g.16 AT1G79920_circ_g.17 AT1G79920_circ_g.18 AT1G79930_circ_g.1 AT1G79930_circ_g.2 AT1G79930_circ_g.3
Support reads 9
Tissues leaf
Exon boundary   No-No
Splicing signals   GC-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCCCCATCTTCATACAACCAATCCTCAACTTCCTGCAGATTCGCCAGGAATGCTTCCCTCT
CCGAGTCAGTGATATATTCCTGGTATTTGTCACTCActttgtttcgcatatcataaacataaga
ctcaacagcattcttccggtccttggtctcttccataactctgtcttgcagagccatctcaaat
tccttctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGTTTCGCATATCATAAACATAAGACTCAACAGCATTCTTCCGGTCCTTGGTCTCTTCCAT
AACTCTGTCTTGCAGAGCCATCTCAAATTCCTTCTCCACTGCCTTTTCAACTTCCACAGTTTTC
AAGGCACCATAGACCAATTCTGACAGTGGTACATTTGTTTTCTTCACCTTCTTCTTTGGAGCCT
CTGCCTGCACAATCCAATAATAAAGTATCCATAATTATTTATTGTTCACAAGCGAATAGCAAAC
AGTATGAGGTAAGAGAGAAACTAGCCTTTGAATCAGTTTCCATTTGCACCGGCTTCTCAGCAGA
CTCTGGAACACCATTGTCAGTACCAGTTGCATCACTGGTATCTTTGGCGTCCTGCATGTTAACA
TCAGAGTCACCAGAAGCAGGAGCTGCCTCGGCAGAAGCTTTGTCAGTGTCCATCTTAGCAGTTT
CCTCTGATTGATCTTTTGTGACCGATACTTCAACTTCTTCCTCTTCCAAAAGCTGCATTTAGGA
GAGATAAAAGTGGATAAATTAACGAACCATAAGTGGCTAAGTTCATAAGGTAAGCCACGGTTCT
GCATGATCAACTTGTAATCAGTTAATAGAGAGAATCGGCCTTTAAATAGTTCACGTAAAGAAAC
TTACAGTTGCTGATTCAACAGAGACAATTCCATGCAGGTTCAATCTAACTTTCACTTTCAGCTT
TGCCCTCTCGCCTTTTGATGACTGGAAGGGACCAATCTACAAAAAGGAGATCCACCATTAGAAA
CAAGAGCACTACAGTCATACATAGTCTTGACATTGGGCAAAGATCAAACCGTGTATGTGCTGAT
TTTAGGAGGTGCTTGCAAATCGTTCACATCACTGTACTGCACATCAATAGAGAATGTTCCAGAA
CGATAAAATGTTAGAGCCTTGACACTAGGAATAGGATTTCCTTTCGGAAAAACAATAGTGCTCT
GCTGGTTCTCAGTGCCTCCATTTTGAGCATCAGTCGCTGCTCCTTTCCAAGCAAGCGATATTGA
GAAAGGGAAGCTCTCATGAACCTAAGAGAACAAAAAATAAATCATAATATGACTAGTCAGATAA
CCTGGAGTATAACAGTTCTCGAGTTGCTTACAAGTACATTAAAATAACGACATTTACTTAAGCA
TAGATATGCACAAATTACCTGGAATTCGCGAACTTTAAAGGTCGGACTGAGAATGGCACACTGC
AAGGCACATCCCCTCGACACACACTCACTTGCATTCATTGTACGCCTGGGCTCCTTACCAAAAA
ACTCAGTTAGAATCTTGATCATAGCAGGGACACGAGAGCCAGAGCCGACAACCTCGACCATATG
TACATCTTCAACAGTGAGGCCCGCATCAGAGAGAGCTTTCTCTAAAGGCCTCTTAACACGCTCC
AAAATCGGGATGCTGATCTCTTCAAACTCTTCCCTCTTGATGACACCCCTAACATCTTTCTCAG
CCATCAAACACTCGATATTCAATGGTGCCATAGGATTAGCGCTTAGAACCTTTTTCAGTTTCTC
GCATGTAGCGCGGAGCCTGAGAGAAGCCTTAGCATTCTGGGAGACGTCAATCTTGTACTCGTCC
TTGAACTTAGCAGCAAAATGATTGAAAAGAACTTCATCAAAATCCCTTCCCCCAAGGGAGCGAT
CGAAAGCGTGAGACAAGATTTTGAGCTGTCCTTTTTTGAAGCCTGCAATACAGACTTGCATGCT
TGCGTGTCCAATGTCAATGAATGCAACATTGAGCTGGTCATTCTCTGGCAGATCTGTCTTATAA
ATTCCGTATGCCAAAGCCGTAGCTGTAGTCTCATGGATCAAGTGCAAGGGATGCAAGCCTGCAA
TTGTGGCAGCATCGAGAACAGCCCTACGCTGGAGGTCGGTAAAGTAAACAGGAATACCAATACA
GCAGTCGACCACAGCTGTATTCAAATTCTTCTCAGCAATACCTTTCAAGTTGGACAACATCATA
CCCATGACCTGAGTCGGGGTAAAGGCTCTAATCTCTCCCAAATAATTAGCATGGATCAAAGGAT
AGCCATCAGGGCCTTCAGTGACAGAAAAGGGAAGGGATTTGATATCCCTTTGAAGCTCAGGGTC
GGAAAACTGGCGACCAATTAAGCGCTTGATTTGTGAGATGGAGTTTTTGGGGTTCATCATGGTA
GAAGCAGCTCCAGCAGTACCGATGAAGCGCTGCTTGTCACCAAAGCAAACGATAGCCGGAGTCT
CGCGATTTGACTCATCATTAAGCACGACGTCGATACCTCTTTGCCTTGCAACAGCAACAAGGCA
ATTCTCGTTTCCAAAATCAAAACCAACTACACTCATTGTTAGGCTTTGTGTTCTTCAGTACTGG
GGCGTCCCACGTGTTCGATAGCAACCTTATAGAACAAAAAAAAGAAAAACACTATCAGATAGCG
ATCGAAGCAGACTAGTCTTGAGCTCGAGAGATTACAGGAGATGACGAATTGGCGGTAACTCAGG
CCAGGTAGCCTTAAACCATCGTATTACTAAACCTAAAATAAAACCACCAGTTTGGGTTTACATC
AACAATACATACAACGAAGATTGGTGGAGTTTGAAACTAAAATACAAATCCGGAAGCAGCGAAA
GCAGAAGATTCATATTGAAACACAAGTACGAGGAACAAGTAATCTGGCAACAAGAAATAAATAA
AACCTAAAAGTGAGGAAAAAGAGAAGCATCAGATCTAGAAGATCTGCAACTAGAGCATACCTGG
ATCGCGAGAGGGGTTCGCGTTCTGGAAGCTTCCACCGAAATCTGGGTGAAGGTGAGAAATCTGT
AATCGTGTCGCAGCCAAAAAGTGAAGAGGAAGGGAGAAGAGCTTCTTTTATAAAGGAAGAGCAA
GAGAGAAGAGGTTTTAATTAAGGAGCAGACACCACCACAGGGTTTGGGTTCCTCTGGAATGTTC
TTCTCCTTTCCTTTTTTTTTTTTATTTTAAAAACACTTTCATTTCCTTTTTATTTTTGTGATAT
TTTTGCCTAAATTATTTATTTATTGCCTTTTTTTTTCTTAGGTTTTTTTTTTTTATCCCAGTGT
TTTTGTATATTTTTATTCGAGTCTACATATAATTATTTAAACCCAATGTATTTAAAATTAATAA
AATTATTATAGAGAAGTGGCTGGTGTTATCAGAATTTGTGGTACATAAGATATGCACGAACTAA
TTGCATTGTGGTGTCTGGAACATGCCATTATCTGCGGCGCCCAGAGATGATTCATGGATTTATG
TTAGAGATTTTCATTGTCCTCACTGGTGCAGGCAGCTTAATCACATATCGTAGCAGTCGCACTC
ATTCTGTGCTCATAACGAGGAAATGAATTCATCCTTGTTTAACCCCGTTTGGATTGGAGAAACG
ATACAACTTCAGCCTGGATGACCTCAAAGATGTTGCCAAAGGCTACGACTGCTTCATCAAGGAA
GATGTTCTTTGTACAACAATGGTAAGGAAGAGAAGTGAGGAAGACGAGTTTTGTCACACTGATT
TCACGTAAGATATAAGAGAAAAGATGTTAAGCTTAGGGGGTTCAAAGTTGCCTTTTAAAGCTCC
AATATATATAGAACCAAATTGCATTTCATTTGCTGTTTATAAAAACAGCCCAGTCCAACATAGA
ACGAATCCGTGTACACTCCATAATAGTTATATAGAGGAGCAGAAAAAATGACTTTCAAATTAAA
AACAAAACCACAAGGAACAATAAGAAAAAAGATGCTTCCTAAAAATTGTTTTCGAAAAGGAAGA
ATTAACAATATAGATTTTTTCCGGGAATAATAGCGAAACCAGAAAAAGAGGTTCCACTAGGTAA
ATCAAAAAGAGTTAAGAACAAAATCGATACAACACCATCTCTCTCTCGTCATTCATTTAGGTAC
TACCTTCCGCGGGATTCTCAGTCTCCATTGGTTCGGCAGAAGCTGGTTGCTCTGGCTCACTCTT
GCCCTCATCCGCCTGCTCACCTCCCTTGGCTTGTGGTGCCTCTGCTTTAGCCACCGGCTTTGGT
TTGGTCATTATAGGCCTGCAAAACCTGTAAAACATCCATAGCTGGTTCACTCTCTATTATCAGA
TTTAGCATTTCTTTTAAAAGACAAAGACACAAGGAGCCTTGCTTACTTGTCCAATGCCTCTGCC
TTGCTTTTAACGTCAGCTGACAAGAGAGCCGGTGTGGCATACTTGGGAAGTGTGTCCTGCTGCT
GCTGCTTTCCCCGCAGCCATGCTTCTGCTTCCACACACTCGTTCAAAACCTTAATCATTTCACA
ACAACAAAACATCAAACAATTTCCCCAAGCCTGAGAAATTTAAGATTTTTTTTGTGCTTCCAAG
ATTGAGCCAAATTATTACCTTTTGCTTCTCTGCCAATTCAATGTGATCAAACTTGGGATCAGTA
GACATAGCTGCCTCTCTGTAGCTGTTAATACAGTAACCAAGCTGATCAATGACCGACCCTCTTT
CCAATGACTCCTTGTAACGCACTTCAACAGGGTCACCCACCTGCAAAATATTAATCCCACTCCT
CTGTTAAAACATTATCCTGAAATATGATTTCTTCCTGCACAATATAAAGTGTCATCATATGCAT
GCATTACCTTCTTGAGCTCCTCGAGCTTCGCAACATAAACACCTTTGGTCTCATCTTCCCCATC
TTCATACAACCAATCCTCAACTTCCTGCAGATTCGCCAGGAATGCTTCCCTCTCCGAGTCAGTG
ATATATTCCTGGTATTTGTCACTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.737971991
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Dou et al., 2017