Detail information of BGIOSGA031532_circ_g.8


General Information
CircRNA Name BGIOSGA031532_circ_g.8
ID in PlantcircBase osi_circ_002913
Alias 10:19167135|19168097
Organism Oryza sativa ssp. indica
Position chr10: 19167135-19168097  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA031532
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031532_circ_g.5 BGIOSGA031532_circ_g.6 BGIOSGA031532_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA031532-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTATACCACCGTCCAGCCATCGCCAATGCAGCATCAAATCTCCTCATGAGCCCATGAAGCATG
AACACCAGGGAATAAATGTTCCACATTGCTACAGCTctgctttggcttcccattttgacctcca
attgatgtcacaataatctgacctgtttctgttccatttgcattaacaataacaccttcagatt
cctataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAAA
GTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATGG
CCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTG
CTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGA
AGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCT
CCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCCTAACAAGAACAAT
ATAGGTTATCAACTCAAGCTCATAATAGGGAGGAGAAACTAATCCTACTTTCCTTATTCTCAAG
CACAGAATTCATATTCATCCGCTAGAAGTCACATACTATACCTATTAGCTAACATTGTGCATCA
AACTCTTCCACCAATTCATTCTACAATATACACTGCCCAGTGCCCAATTTTTTTATTGTGATTG
GTGAGCAATGTTTTGTTCTCAGTATTATGAGACATCAACTACGTCATCAATCACATCCTTCTGA
AAAGCTGTTCAACGCTCAACAAAGCAAGACTACGATTAAGGGACATGACCAAAGCAGACCCATC
ATGAAAAGTTACACATTGAAAAGCATTTCCTTGATAACTTCCCAATCCAATAAACCTATTATTG
GCAGATTCTCTTTTTCTAGTAATGTCGGACAGCTATACCACCGTCCAGCCATCGCCAATGCAGC
ATCAAATCTCCTCATGAGCCCATGAAGCATGAACACCAGGGAATAAATGTTCCACATTGCTACA
GCT
Conservation Information
Conserved circRNAs osa_circ_007727*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021