Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_010372
Alias 1:28506127-28508641
Organism Arabidpsis thaliana
Position chr1: 28506127-28508641  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 1_circ_ag.3 AT1G75920_circ_g.1 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.9 AT1G76510_circ_g.10 1_circ_ag.11 AT1G76520_circ_g.1 AT1G76520_circ_g.2 1_circ_ag.3 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 1_circ_ag.4 AT1G76680_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads 2
Tissues flower
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATAGCAAGATTCGTCGCATCAGTTCTGAAGACCTTAAGACTGGCGTTTGTTTTGCATCAGGT
GGTTCAGGAATTGACGATCTTACATCCCGAACACTGagagttttatcgccagctgaccaagtaa
aagatttcaaaggctacaaaagaaagctaaaaggtgtagtaggcaggtcaaaagcaaaaaaaat
agttgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAGTTTTATCGCCAGCTGACCAAGTAAAAGATTTCAAAGGCTACAAAAGAAAGCTAAAAGGTG
TAGTAGGCAGGTCAAAAGCAAAAAAAATAGTTGCAAATTCAGTGATTCTTGTTTCTGAAGGAAA
TAATGATATTGGAATCACATATGCGATTCATGATGCTGGTATGCGATTAATGACTCCGAAAGTA
TACACCAGTAAATTAGTTGGTTGGAACAAAAAATTTATAAAAGTAAGATGGAGAAAATGAATTT
TTTTTATTCATCAACACTGTTATATATGTGTTTATTCACATTTTTTTGGTTTTTGTAAATGTAT
GAAGGATTTATATGATCACGGAGCAAGAAAATTTGCGGTGATGGGAGTGATACCATTGGGATGT
TTGCCTATGTCAAGACTTATTTTTGGTGGGTTCTTCGTGTGGTGTAATTTCTTGGCAAACACAA
TCTCTGAAGATTACAACAAAAAATTGAAAAGCGGAATTAAAAGTTGGAGAGGAGCATCAGATTT
TAGGGGTGCTAGGTTTGTCTATGTCGACATGTACAACTCTCTTATGGATGTTATCAACAATCAT
AGGAAATACGGTACGTAAATACGTAAATCTCCTTTTTATAAAAATATATGCATTACCAAGATCA
ATACAAAGGAACCACATATTTAGTGATGCTTAGACATTTGAAATCTCAGGAGCGACCATAATAG
TTAGGTATTGTGTACTTGTATGGTTTCAGGATTTACCCATGAGAAGAATGGATGTTGTTGTATG
CTTACGGCAATAGTACCATGCTCCAACCCAGATAAATATGTCTTCTATGACTTTGCTCATCCCT
CCGAGAAAGCCTACAAAACAATTGCTAAAAAGCTTGTCGAGGATATCAAGACAGGACTTGCCTG
ATTTCTTACAATGCTATTTTCATCTTGGAATTACCATAATTAATTATATACGTACTTCTTCTGT
TTCAAAATCTTTGATGTTCTAGAGAATTTTTTTTTGTTTTACATTATAATGTTCTCATTTTTAA
TGTAAAATTTATTAGTTTAAAAAAAATGTTTTGACCATTTATATTTTGCAGTTTGTTATTTTGC
AGTTGGTTGAATTGTGTTAGATAAATAATAAATAATGTTTTTATCTACAAAAAATAAAAAATAG
AATAAAGGATTTTTTTATTTTTTTTTTCACAAGAATAAAGGATTTTCTTATTAGTGTACAATAT
CCTTAAACAATCTCTTCCTCCAAACACATCAGACTAGTCACGCTTCTGCTCACTAAATTTTATT
CTATTTCAAATGAAAAGAGCGAAGCTTCTTGAACTCTACAGCTCTTACCAAACTACTTTAAAAT
CTTTTCCCACTGTCACGTTTCAGTACTAGGACTCCACAGCATCTCGACGATCATATGTGCAAAC
TTCTTGAAGCTCAACCACTATATATCTTCTATATCATTTCTCATTTAAAAGTTCTCCTGCTGGA
AAAGTCTAAACAATTCGTCTGTACAGATTTAATTTTCATTTGTAAAATTAACCGAAACCAAAAG
AAAAAGGAAAGACCAAATAAGAAATCAACAAACTTGACAATTTTGACTAAAGTAAGATAAATTT
GATCGAGTTTTTTTCATAAAACATGGTTTGATTTTCTAAGAATTTTGACTAGTAATAGCAAGCA
ACACAAACTAATCTACTAGTAGACTAGGCTGCACTATATTTGATCGGAGAGTCATTACCTGCAA
ACCAAGTTCTCTTTTATGTAAATTAAATCATTATTTTATAAAATGGCATTTTTCATGAGATTTA
TGGAATTATTATCGTCTTAAACTATCCTAACATTCATTCGGTGTGTAATATTGTACTCTCATGC
ATTTTGGCTTCCATCGACAAGAAAGAAGTAGACGTCTAAACATAGTTAGGAAAAATCAAATGAA
TTCTATATAAAACACAGGATAAATTAAAAACCATTCAGAAAAATTTTGGACTTATTTTCGATAT
GTTTAGGGGAAAAATATTTGTGTTATCATTATTTTCTATTTACGTCCTCTCATCAGCGGCTGAA
AAAAATACATCATTTTCTGCGCTTTTTGCTTTTGGTGATTCAGTCTTAGATACGGGAAACAATA
ATTTTCTTCTTACTCTTCTCAAAGGAAATTATTGGCCATATGGTTTGAGTTTTGACTATAAATT
TCCGACGGGAAGATTCGGAAATGGAAGAGTTTTCACCGATATAGTTGGTATAATATCCCAATGT
TGACTGGCTTTACTTAACTCTACCTATAAAGATCTCTCACTGCACACTTTCTATAGATCCGAGA
CTAATAATCTTGATTAATCATATTATTTATATAACTAGGTAGTATTCTCATGTGGTGAAGTCTT
CTATTGTATGCAGCCGAAGGTTTACAGATCAAAAGACTTGTACCAGCTTATAGCAAGATTCGTC
GCATCAGTTCTGAAGACCTTAAGACTGGCGTTTGTTTTGCATCAGGTGGTTCAGGAATTGACGA
TCTTACATCCCGAACACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.344568284
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020