Detail information of Os04g0566500_circ_g.11


General Information
CircRNA Name Os04g0566500_circ_g.11
ID in PlantcircBase osa_circ_024922
Alias NA
Organism Oryza sativa
Position chr4: 28432301-28433385  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0566500
Parent gene annotation Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);
Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);
Similar to Argonaute protein. (Os04t0566500-03);Similar to Argon
aute protein. (Os04t0566500-04)
Parent gene strand -
Alternative splicing Os04g0566500_circ_g.3 Os04g0566500_circ_g.4 Os04g0566500_circ_g.5 Os04g0566500_circ_g.6 Os04g0566500_circ_g.7 Os04g0566500_circ_g.8 Os04g0566500_circ_g.9 Os04g0566500_circ_g.10 Os04g0566500_circ_g.12 Os04g0566500_circ_g.13
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0566500-03:2
Os04t0566500-04:2
Os04t0566500-01:2
Os04t0566500-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCGCTGTGAAGAACCATGGCCAGGAGCTCCTGGAGCCTCTCCAGAACTCTCACCGGTGCTGC
CAGACCCAGTTCTTTTCTTCTTCACCATGATGGGCActttgggtgccttggccaccaccaagac
tatcttcctcatcttgaagagtaatttcaaatgtcctagaagcaaatggcaatggtccagctgt
gtaaagac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1009
Transcript exons: 28432301-28432521,28432598-28433385
CTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCTTGAAGAGTAATTTCAAATGTCC
TAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCCTTCCATCATAGGCAGGTAGACG
CCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATTCACGCCA
CGTGAAGTAACCTCAGGAGTAATAGATACGTCGTATTGGTGAAGGTCTTTATCAGGAAGTTCAG
CAAAGAAATGGTTCGCCTTCACAATGCACCTGTCCCCATATGTACCCTTGCCAGGGCGCAACGG
GAATCTAACTGATTTGCTTGACGGTGGTGCTATTTGAATGGCTTGGCTGGTCGAACTTTGATCA
CGGGTGGCAAGTTGCTGAAACTGTTGTTGGACTTGTCCACTGCTCACCTCCGCCGCAGGCTGAG
AGGATGAGCCAGCTCCCGATGGGGTTGGTGAAACCATCGGGGCTTGGTATTGGACATGTGGGGC
TTGGTGCAGCTCGGGAACTGTTCTTGATGAACCTGAAGGAACACTACGTCCGCCACTCCCCCTA
GGTCCGCCATAGTATGGCTGTGGCATTCCACCTCTGGGGCGTGGACCACCACGTCCTTGATAGT
CACGCGGTTGATACTCGGGAGGCCCACCACCTGGGTGATGTGAACCTGATCCTCCACGGCCCTG
ATAGTCAGGAGGCCCACCACCTGGATGATGTGAACCTGGCCCTCCACGACCCTGATACTCAGGA
GGCCCTCCACCTGGATGGTGTGAACCTTGCCCTCCACGGCCCTGATAATGTCCACCACGGCCCT
GGTATTGCCCACCACCACGGCCACCATGTTGAGGCACCCAACCACGTCCTCCCCCATGCTGTTG
AGGACCTCTCTCAGCTCGCTGTGAAGAACCATGGCCAGGAGCTCCTGGAGCCTCTCCAGAACTC
TCACCGGTGCTGCCAGACCCAGTTCTTTTCTTCTTCACCATGATGGGCA

Genomic sequence CTTTGGGTGCCTTGGCCACCACCAAGACTATCTTCCTCATCTTGAAGAGTAATTTCAAATGTCC
TAGAAGCAAATGGCAATGGTCCAGCTGTGTAAAGACTCTTCCTTCCATCATAGGCAGGTAGACG
CCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATTCACGCCA
CGTGAAGTAACCTCAGGAGTAATAGATACCTGAAGGAACAAGATAGGTGATCAAAATCACAAAA
TGAAAGCTACAGCAAGGAAATAGGACTTACAAAAGCCTTACGTCGTATTGGTGAAGGTCTTTAT
CAGGAAGTTCAGCAAAGAAATGGTTCGCCTTCACAATGCACCTGTCCCCATATGTACCCTTGCC
AGGGCGCAACGGGAATCTAACTGATTTGCTTGACGGTGGTGCTATTTGAATGGCTTGGCTGGTC
GAACTTTGATCACGGGTGGCAAGTTGCTGAAACTGTTGTTGGACTTGTCCACTGCTCACCTCCG
CCGCAGGCTGAGAGGATGAGCCAGCTCCCGATGGGGTTGGTGAAACCATCGGGGCTTGGTATTG
GACATGTGGGGCTTGGTGCAGCTCGGGAACTGTTCTTGATGAACCTGAAGGAACACTACGTCCG
CCACTCCCCCTAGGTCCGCCATAGTATGGCTGTGGCATTCCACCTCTGGGGCGTGGACCACCAC
GTCCTTGATAGTCACGCGGTTGATACTCGGGAGGCCCACCACCTGGGTGATGTGAACCTGATCC
TCCACGGCCCTGATAGTCAGGAGGCCCACCACCTGGATGATGTGAACCTGGCCCTCCACGACCC
TGATACTCAGGAGGCCCTCCACCTGGATGGTGTGAACCTTGCCCTCCACGGCCCTGATAATGTC
CACCACGGCCCTGGTATTGCCCACCACCACGGCCACCATGTTGAGGCACCCAACCACGTCCTCC
CCCATGCTGTTGAGGACCTCTCTCAGCTCGCTGTGAAGAACCATGGCCAGGAGCTCCTGGAGCC
TCTCCAGAACTCTCACCGGTGCTGCCAGACCCAGTTCTTTTCTTCTTCACCATGATGGGCA
Conservation Information
Conserved circRNAs NA
PMCS 0.469507541
Functional Information
Coding potential Y
Potential coding position 28433377-28432422(+)
28433304-28432349(+)
28432417-28433339(-)
28433379-28433339(-)
Potential amino acid sequence MMGTLGALATTKTIFLILKSNFKCPRSKWQWSSCVKTLPSIIGR*(+)
MARSSWSLSRTLTGAARPSSFLLHHDGHFGCLGHHQDYLPHLEE*(+)
MMEGRVFTQLDHCHLLLGHLKLLFKMRKIVLVVAKAPKVPIMVKKKRTGSGSTGESSGEAPGAP
GHGSSQRAERGPQQHGGGRGWVPQHGGRGGGQYQGRGGHYQGRGGQGSHHPGGGPPEYQGRGGP
GSHHPGGGPPDYQGRGGSGSHHPGGGPPEYQPRDYQGRGGPRPRGGMPQPYYGGPRGSGGRSVP
SGSSRTVPELHQAPHVQYQAPMVSPTPSGAGSSSQPAAEVSSGQVQQQFQQLATRDQSSTSQAI
QIAPPSSKSVRFPLRPGKGTYGDRCIVKANHFFAELPDKDLHQYDVSITPEVTSRGVNRAVMFE
LVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQSAHHGEEEKN
WVWQHR*(-)
MVKKKRTGSGSTGESSGEAPGAPGHGSSQRAERGPQQHGGGRGWVPQHGGRGGGQYQGRGGHYQ
GRGGQGSHHPGGGPPEYQGRGGPGSHHPGGGPPDYQGRGGSGSHHPGGGPPEYQPRDYQGRGGP
RPRGGMPQPYYGGPRGSGGRSVPSGSSRTVPELHQAPHVQYQAPMVSPTPSGAGSSSQPAAEVS
SGQVQQQFQQLATRDQSSTSQAIQIAPPSSKSVRFPLRPGKGTYGDRCIVKANHFFAELPDKDL
HQYDVSITPEVTSRGVNRAVMFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQ
DEEDSLGGGQGTQSAHHGEEEKNWVWQHR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017