Detail information of Os10g0558700_circ_igg.1


General Information
CircRNA Name Os10g0558700_circ_igg.1
ID in PlantcircBase osa_circ_043292
Alias NA
Organism Oryza sativa
Position chr10: 21989259-21992030  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0558725_circ_igg.1 Os10g0558725_circ_ag.1 Os10g0558725_circ_g.1 Os10g0558725_circ_ag.2 Os10g0558725_circ_ag.3 Os10g0558750_circ_igg.1 Os10g0558750_circ_igg.2 Os10g0558750_circ_ag.1 Os10g0558750_circ_ag.2 Os10g0558900_circ_igg.1 Os10g0559300_circ_igg.1 EPlOSAG00000044329_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTCACATCAGTACAAAGGTGCAAGAGAGGTAGGCCATCCAACAACAATTTTCAGAAGCTTTT
AGGTACGTTCTTTCTTCTTTGGTGCTTCCACAAGTTaagttttctagataataggagcttttat
tgaactcatccaaatacatcaaggtccttcgacatgtgaaagcataatttgttattggtcatta
cctcaagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 186
Transcript exons: 21989259-21989351,21991938-21992030
AAGTTTTCTAGATAATAGGAGCTTTTATTGAACTCATCCAAATACATCAAGGTCCTTCGACATG
TGAAAGCATAATTTGTTATTGGTCATTACATCAGTACAAAGGTGCAAGAGAGGTAGGCCATCCA
ACAACAATTTTCAGAAGCTTTTAGGTACGTTCTTTCTTCTTTGGTGCTTCCACAAGTT

Genomic sequence AAGTTTTCTAGATAATAGGAGCTTTTATTGAACTCATCCAAATACATCAAGGTCCTTCGACATG
TGAAAGCATAATTTGTTATTGGTCATTACCTCAAGTGTGTCGCCAATGTTAGCAATAAGTGCAC
CATTTGGAGCATCTATGGAGAACCACTTGCCATCTTTCTTGATCTGCAGGCCCTGCACATTGTT
AATCTCGAGCAGCAGTGTCAGGCCACCCGCATCAGAGTGTGGCGAAAGGCCCATCACCTTGTCA
GCTTGCCGGCATGGTGGGTAATAGGCCATCCTTAAGCCTCGAGGCTGCTCTTCAAATAAATCTA
AAAGTGACTCTGGCTTAGCGCCCACAGCCTTAGCCATGAACTCAAACAAGCAGAGTGCCAGGCT
TTTAGTCTCTGATGAGTATGCATCAATGGATTGCCTATTTCCAGACATCTCCAGTTAAGAAGAG
ACAGATGCCTATCAAAAGCTAAATTGCACAGTTTTTTTTTTTTTTTGGTAGATCACCTGAAAGA
TGCTGGAGAAGTGGGCCAGAACCTTAGGTCCCTTGAATCGCTAGGATGGACATGAAGATACAGC
ATGTCTGCCCAGTCAAGTTTCTGGTCCTCAGAGAAAACAAAGCTCTGTCCATAGCCTTCTAGGC
TATTCGGTAGCTGTGTGTACTCCTTCTTGGTGTCCAGTGGCTGGCTAAAGAAATCAACAATGTC
TCTCTTCAGGTTTGCAATCACTTCATCTGGCACTCCATGGTTAATGAGCTGTAGTTTATTCCAA
AAGTAAATGTTTCCATTATACTAGTTGCACAGCTCAAACTGAGCTAGAGCTACCTTACAGGACA
TGAATTTATTCATTTTCTGCCCACAACTTTATTTGATTATCTGTAGCGTCTTTAATCAATTCAA
ACATTTGTATATACAGTATGCATTTGCAAATAGGTATCTGTTGCTTTCCGAAGATGAAATGCCA
AGAACCTAAAGTTACATACCAGAAAGAACCCCCAATACTGGCAGGCAGATCTCAGCTTCACACA
CTCCTCTTCTGATGATTGCGGACAAAGCAATTTCTTGAGATCGATGATCGGAATCGCCATGTCA
CCTTGGTAGTTGTTGATGACCTCCTCAGAACTAGCCTCTGGTCTGATGTACCTTTCAGGTATGT
GTTCATCTGGATCATTGCAAATTTCTGCAAGCGCCTGCACATTAGGCACTGGGAGAGAACCAAC
GGATCTTGCTCCCGCCATTGCAATTCCCAGTTTCTGCACTAAGTGTTTTCTTTTCTTTTCCTTT
TTTGGCAAGCAGTTGTTCTAGGCTGTATACTGCATATAACGTGTAGAATATACCATATTTATAG
ACCTTCAGAAGAACACTCACTTGATTTTATGGTTTACTGTTTAGGTATCCAGGTGTTTACACTA
GCTAAATCATGCCTTTTTTTTTTGAAGTAAAAGGTAGAGAGTCTCTACCTTATGGCATTAGAGG
AACACATCTATGTCATTAGAGGAACACATCTATGTCAAAAGGGATTTTTTTTAAAGATAATGGA
TAGAAAAACTGGTGGATATAGATGGCCAACTGAAAGCAACACATACAGTATCAGAGACGGGGAA
GGCAGAGTCTCTTATCCTGATATGGCTTCAAGCTCTTCAATTGTAGTACACTATCTTCCATCTT
CACGTCAAAAGAGCCCTTGGAATTTTCTCCATCAAGTGTGACTCGCCTGCCATCAGCGATGACT
AACCATGGAAAAAAGCAGGGTGATGTTCTCAAATTCCAATCACCTTGTCTGTCTGCTTCAACTG
ATGTGAACAGCTCTACCATTCCTCTCTCAAAGAAGAAAAGGTTGAATCATGCTACATAACAATC
ATTCTCTCTTAATTCTAAATAAGAGAACATGACATCCTACGTGCATATTTAGTTGTTGCTGTTT
TCAACCTTACCAAATTTTGATATTGCCAAAGTTTGGTAAGGCAACAAACTAAACACACTTCAAC
CATTACTATCTTATTAAATTTTGGCAGCTCTAGAAGCTTCTTTTCTTAAAACTCTACTAGAATT
TGGTAAAGACATCAAACTAAACAAAGCCAACGCTACCGAAATGTAGTAATGCCAAAGTGTGCCA
AAATTTAGCATGGAAGATGGTGTACCTAATTTGTTAGTCTGAACTGAAATTCTATTATCGTACA
GTTAATTCTTCTAGGCATCAATGTTTATTTTTTGGATGTTTGCATCATAACCTGAGTACGGGCA
GTTCCTGATATATGGGACAAGACTCAAAATATCAGGTAAATCATCCTCATAACACAGGATTATT
GGACACCTCTAGATATAATAAGCAGCAAATCTCAAGGACACAGCCTTGAAGCAGCTTCATCTCA
GTATTTCACTACACTACTACAGGCATCGTGGTCATGGCTGCTATTCCAACTTCAACATCTCCAG
TCTGTTCTTTCCATCAAGCTGTTGTGTGAAGAATTGTGTCATGAAATCAAGGTAACTAATTGAT
CTGTAATTCACTTTACCATCTTTCACAAATTCCGTCAGAGGTCTGATCACCATATTCTCACACG
GATAGTGGAACAGTGATGCTGAAATCCGCTCCTTATTTGGGTTTATCACGGCCCTGTGCTCAAC
ACTTCTGAACTTTCCGTTACTTAGGATCTGTACATATCAATAGCACATCACTCACATCAGTACA
AAGGTGCAAGAGAGGTAGGCCATCCAACAACAATTTTCAGAAGCTTTTAGGTACGTTCTTTCTT
CTTTGGTGCTTCCACAAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.092849242
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study