Detail information of BGIOSGA032547_circ_g.16


General Information
CircRNA Name BGIOSGA032547_circ_g.16
ID in PlantcircBase osi_circ_008801
Alias Chr10:3924462_3925787(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3058982-3059953  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.6 BGIOSGA032547_circ_g.7 BGIOSGA032547_circ_g.8 BGIOSGA032547_circ_g.9 BGIOSGA032547_circ_g.10 BGIOSGA032547_circ_g.11 BGIOSGA032547_circ_g.12 BGIOSGA032547_circ_g.13 BGIOSGA032547_circ_g.14 BGIOSGA032547_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-CA
Number of exons covered BGIOSGA032547-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGTTTGCAGTACAATTATATCATTTTGTACTCCCTCCGTTTTTTAATAGATGACGCCGTTG
ACTTTTTCTCACATGTTTGACCATTTGTCTTATTCAgatctccttctatattatcaggtgttct
tgatctactgaaggcattatgggaaagtggtgctcaatttatatacattttagagaaactgaga
agttctag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTCCTTCTATATTATCAGGTGTTCTTGATCTACTGAAGGCATTATGGGAAAGTGGTGCTCA
ATTTATATACATTTTAGAGAAACTGAGAAGTTCTAGAACATTCTGGGAGAACTTATCATGCTGT
ATTCGTGCTGCTTTTGCTAGTTACCCTATCGACAGCGTTGAGACCGTTGATGAAAAAAAATCTT
TGAGGTATGGTCATCATGCTTTAGCTTTCCATTTCCTACATGCTAACTGTAATATCTGCCCAAG
AGTTCTATTGAATAATATTTCTTTTAAAATTTAAAACATTTTTGGGTTTGAAGCCACCAGTGAT
GGTTTCATCATATGAATCCAATTTGACTGGTCTCAGTTTTTTGTTATCGACTGGATCCTGTTTC
AGAATTTGATATTAAATACAACCTTTCATAGATAAGATTTAATACCATGGTTCTCAGAATGATA
AAGCAAGGTTTTGCATATGCAGATATTGTTGTCTTGGTACAATTTTTGAGATCATGTCATATGA
GTTGTTCTTGCAAGGAAAGTTGCTTACAGAAACAAAAACTTCTGATCCTGCCCCTGTTGGTTCA
AAGGAGCAAAAAGAACCTTCTGTTGCACCTTGTCCAAGTGACATAGTGCTCAAATGGTTTGATA
GCACGACTATGGAGGATTGTAAATCATCTATCAAAGTAATGGGTACCAAAATGATCTTCTTCAT
CGTGCTAAGGTAACTTTCCAGTTCTTGACTTCTGAAATAAAGTGAAGAGAATGTTGTTTGTTTA
TTTTGAACTTTTATTGTTTTACGCCCAAGAGATTTTTGGTCACTCATTGGTTATCTGACTTCCT
TAGCACGCATTGTGACTTATATAGGCTTATAAATATTGATATGTGTTTGCAGTACAATTATATC
ATTTTGTACTCCCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCAT
TTGTCTTATTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021