Detail information of Os10g0521700_circ_g.2


General Information
CircRNA Name Os10g0521700_circ_g.2
ID in PlantcircBase osa_circ_007716
Alias NA
Organism Oryza sativa
Position chr10: 20197242-20198804  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0521700
Parent gene annotation Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os
10t0521700-01)
Parent gene strand -
Alternative splicing Os10g0521700_circ_g.1 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0521700-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAAATGAGTCTCATGATACATACCAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACC
AACAACACGATGGATATATGCAAGGGCACGGCACATcagcagctgagaagtcgaacaagggtgg
taatgatcgtccatttgacaagcaggtcttgggatcccgcagttcatcaaagaatggatgagca
caagcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCAGCTGAGAAGTCGAACAAGGGTGGTAATGATCGTCCATTTGACAAGCAGGTCTTGGGATC
CCGCAGTTCATCAAAGAATGGATGAGCACAAGCATCAACCTGGAAGAACAGCCAAATACGTTTA
ATCAGAACAGTAATCAAGATTTTTTTTGTTTCTTTGTTTCCCAATCTAGGACTAATTAGTAGAT
ACAAACATAATATATCATATGTAGTACAACACTTTCTTATGAGGAAATTAGATTATTGTGCTCA
TGATGATCCACCTAATACCGATCTGGTTCAATAATTAGTTAAAATGGCTCAAATCCAATATTAG
TCTTACAGCTGTGCAACGCAAATTTGGCGAGTACTGCAGCAACCTTGACACAAGATCAACAGCT
TCAGGTGGCATGCGCTTACCAAAAAGCTGCAGTTGGAAAAATTTTGTGAGAAGGTTACATCAGT
GTAGAACTAAAGTGCTATGGAATTAGAGATCCACCAACCTTGTGCCATGGATGAGCTTTTATCT
GAGGGAATTTGAATTCAGAATAGTTTGGATTCATGCACCTGATTTCTTCTCTAGTTGGTGTACC
CAAAATCTATAATAAGAAAAAAAAACAAGAAATGGATCAGTCCACAGACCTAAATTACTGTCTC
TAATGGATGACAGGAGATAGAAACCTTTATTATTTCCACCAGTTGATCAACACCACTTTCTCCA
GGGAACAGAGGCTGCAATTGTCCATATTCGGAAAAAAGATCAGCCAAAGCAGGAAAGAGTCTTG
CAGCACAGCATCCATTATTAACCCCCAACCCCCATAAAATGAAGTACTTGCATTCAAATGGAAA
TGCTGAGTTATGTTATTTATTTTTTGGTAATGGTGTGACTTAAGATAACAGTAAGTTCGATACA
AAATTATTCAATCAAGTATATCCTCGGGTCATGAACTTGACTAGAAAAAAACTGAGCTGCTAGA
ATGATTCTATACCTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATT
GCTGTGGTATACTCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGT
ATGATATGTTAGGTTCACCAGGAACCTGAAATGGAGTGTCTGCATTGTCAAATACATGTGCAAC
ACAGAATCAACATGCTAGCAGGACAAGAAGCATACCAATTTCTTAGCACTTCCAAAATCACAAA
GCTTCAGTTGATGTGTATGAGGATTGACCTGAAAAATCGATCAACTTGCAATGAGACAATTGCT
TGTACAGCAGGTTTACTTATATCACAACACATAAACAGCTGAAAATATTGCAGGCAATCATGCT
TTTGCACAAGCTGCAAATGCATGTTTCAATCTTAAACTCCATCATCTGTTTACAAGTACCCAAA
TAGTAAAAAAGGGAAAAGAACACTTGCAAAGCATGCCCTGAGGAGGGGTGCCTGATAAAAATGA
GTCTCATGATACATACCAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACG
ATGGATATATGCAAGGGCACGGCACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.179052095
Functional Information
Coding potential Y
Potential coding position 20198787-20197327(+)
20198758-20197762(+)
20198806-20198748(-)
20197342-20198748(-)
Potential amino acid sequence MQGHGTSAAEKSNKGGNDRPFDKQVLGSRSSSKNG*(+)
MADTNNTMDICKGTAHQQLRSRTRVVMIVHLTSRSWDPAVHQRMDEHKHQQLCNANLASTAATL
TQDQQLQVACAYQKACAMDELLSEGI*(+)
MCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPEL
IFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYSEF
KFPQIKAHPWHKLFGKRMPPEAVDLVSRLLQYSPNLRCTAVDACAHPFFDELRDPKTCLSNGRS
LPPLFDFSAADVPCPCIYPSCCWCLPSRY*(-)
MLVLIHSLMNCGIPRPACQMDDHYHPCSTSQLLMCRALAYIHRVVGVCHRDIKPQNLLVNPHTH
QLKLCDFGSAKKLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFP
GESGVDQLVEIIKILGTPTREEIRCMNPNYSEFKFPQIKAHPWHKLFGKRMPPEAVDLVSRLLQ
YSPNLRCTAVDACAHPFFDELRDPKTCLSNGRSLPPLFDFSAADVPCPCIYPSCCWCLPSRY*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017