Detail information of 5_circ_ag.4


General Information
CircRNA Name 5_circ_ag.4
ID in PlantcircBase ath_circ_040101
Alias NA
Organism Arabidpsis thaliana
Position chr5: 8032693-8036561  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.3 AT5G23820_circ_g.1 AT5G23820_circ_g.2 5_circ_ag.3 5_circ_ag.5 AT5G23850_circ_g.1 AT5G23860_circ_g.1 AT5G23860_circ_g.2 AT5G23870_circ_g.1 AT5G23870_circ_g.2 AT5G23880_circ_g.1 AT5G23880_circ_g.2 AT5G23880_circ_g.3 AT5G23880_circ_g.4 AT5G23880_circ_g.5 AT5G23880_circ_g.6 AT5G23880_circ_g.7 AT5G23890_circ_g.1 AT5G23890_circ_g.2 AT5G23890_circ_g.3 AT5G23890_circ_g.4 AT5G23900_circ_g.1 AT5G23900_circ_g.2 AT5G23900_circ_g.3 AT5G23900_circ_g.4 AT5G23910_circ_g.1 AT5G23910_circ_g.2 AT5G23910_circ_g.3 AT5G23910_circ_g.4 AT5G23910_circ_g.5 AT5G23910_circ_g.6 AT5G23910_circ_g.7 AT5G23910_circ_g.8 AT5G23910_circ_g.9 AT5G23910_circ_g.10 AT5G23960_circ_g.1 5_circ_ag.2 AT5G24000_circ_g.1 AT5G24000_circ_g.2 AT5G24000_circ_g.3 AT5G24000_circ_g.4 AT5G24030_circ_g.1 AT5G24060_circ_g.1 AT5G24060_circ_g.2 AT5G24080_circ_g.1 AT5G24090_circ_g.1 AT5G24120_circ_g.1 AT5G24120_circ_g.2 AT5G24120_circ_g.3 AT5G24120_circ_g.4 5_circ_ag.5 AT5G24150_circ_g.1 AT5G24150_circ_g.2 AT5G24150_circ_g.3 5_circ_ag.4 5_circ_ag.5 AT5G24150_circ_g.6 AT5G24150_circ_g.7 5_circ_ag.8 AT5G24150_circ_g.9 AT5G24150_circ_g.10 AT5G24150_circ_g.11 AT5G24150_circ_g.12 5_circ_ag.13 5_circ_ag.14 AT5G24150_circ_g.15 AT5G24160_circ_g.1 AT5G24165_circ_g.1 AT5G24165_circ_g.2 AT5G24170_circ_g.1 5_circ_igg.2 5_circ_igg.3 AT5G24206_circ_g.1 AT5G24210_circ_g.1 AT5G24210_circ_g.2 AT5G24230_circ_g.1 AT5G24260_circ_g.1 AT5G24260_circ_g.2 AT5G24260_circ_g.3 AT5G24270_circ_g.1 AT5G24270_circ_g.2 AT5G24280_circ_g.1 AT5G24280_circ_g.2 AT5G24280_circ_g.3 AT5G24280_circ_g.4 AT5G24290_circ_g.1 AT5G24290_circ_g.2 AT5G24300_circ_g.1 AT5G24300_circ_g.2 AT5G24310_circ_g.1 AT5G24314_circ_g.1 AT5G24318_circ_g.1 AT5G24320_circ_g.1 AT5G24330_circ_g.1 AT5G24330_circ_g.2 AT5G24350_circ_g.1 AT5G24350_circ_g.2 AT5G24350_circ_g.3 AT5G24350_circ_g.4 AT5G24350_circ_g.5 AT5G24350_circ_g.6 AT5G24350_circ_g.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 AT5G24352_circ_g.1 AT5G24360_circ_g.1 AT5G24400_circ_g.1 AT5G24430_circ_g.1 AT5G24430_circ_g.2 AT5G24430_circ_g.3 AT5G24430_circ_g.4 AT5G24430_circ_g.5 AT5G24450_circ_g.1 AT5G24450_circ_g.2 AT5G24450_circ_g.3 AT5G24450_circ_g.4 AT5G24450_circ_g.5 AT5G24450_circ_g.6 AT5G24450_circ_g.7 AT5G24450_circ_g.8 AT5G24470_circ_g.1 AT5G24490_circ_g.1 AT5G24490_circ_g.2 AT5G24490_circ_g.3 AT5G24490_circ_g.4 AT5G24490_circ_g.5 AT5G24490_circ_g.6 AT5G24520_circ_g.1 AT5G24530_circ_g.1 5_circ_igg.2 AT5G24580_circ_g.1 AT5G24580_circ_g.2 AT5G24580_circ_g.3 AT5G24590_circ_g.1 5_circ_ig.2 5_circ_igg.3 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 AT5G24620_circ_g.1 AT5G24620_circ_g.2 AT5G24620_circ_g.3 AT5G24620_circ_g.4 AT5G24620_circ_g.5 AT5G24630_circ_g.1 AT5G24630_circ_g.2 AT5G24660_circ_g.1 AT5G24670_circ_g.1 AT5G24670_circ_g.2 AT5G24670_circ_g.3 AT5G24670_circ_g.4 AT5G24670_circ_g.5 AT5G24670_circ_g.6 AT5G24670_circ_g.7 AT5G24670_circ_g.8 AT5G24670_circ_g.9 AT5G24680_circ_g.1 AT5G24690_circ_g.1 AT5G24690_circ_g.2 AT5G24690_circ_g.3 AT5G24690_circ_g.4
Support reads 14
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTATGTGATGTGAGTGCATGTAACCCTGAATATGTGATTGAAGCTGGCACCGACTTTGAGTTG
ACTCTTTCCGACGTTCTTTATGTTGGTTTTGATGAGgaaatcaagtactcggtatctttgcgcc
gaaagaccttagaggaggaggatccaataataaaaatgtgtgtcgacttcaaagtacctgcccc
agctcctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATCAAGTACTCGGTATCTTTGCGCCGAAAGACCTTAGAGGAGGAGGATCCAATAATAAAAA
TGTGTGTCGACTTCAAAGTACCTGCCCCAGCTCCTGCATTTGTCTCTATTTAGTCAAGTTGGCT
GATGAAAAGATGTTTCCAAGTCTCTTTTGATTATATGAGTCTCTCTCGCAACTTTGCTTTTCCT
TTTCCCTTTTTGTGTTGTCCAACAAATAAATTAAAATCTTGGACCGATATCGATAGCGATATGA
ACAAGCAATCGAGCATGTCTTTTCTTCGATTTACTGGTTGATATTAATCAAAAATAAAGTTTTT
TACATAGGAAATGTTTTACTAGTAGCCCATGAGCATAATAAAAGCAGAGAGAACAGAGAAATAT
GAGGAGACTTTCAAATAATTACAACAAAGTTGGATGATTATCCTATTTTATATGATTTTACCAA
TCATAAAGCTCTACAAATTAACAATTAATCTAGGTGACTAAAACAAAATGAATGCTATCATTCT
GCATGGTTATTTCACTTAGCCGTTTTTTTTTTCATTTTTGGTGAGAACAGAGAAATATCTCATT
TTGTTGCTTCCGAAACTATCATAAAGTATACACTGCAAGGTATAAAGAACCGGTCCACAAATAC
AGTGAAATTGAAGGTGTGCTAAACATTAGATAACTGGTTATGCACCCTTACGCTAACACTTTTT
CTTGCTAAGATACAACATCAAGAGTCAAGACATTTCCTTGAGATATATAGGCCGACTTTGCTAG
CCGTTAAAATGTTAACTTTACGTTCTTTTCAAATCTGCAGATTTTATAATAATACAGTTCTTCT
AGACGGATCGGTCTCTCCCAGATAAAATCCACGTGATTGTGAATGAGAAAAATTGGTAGGTAAG
GTAATAAAAAATTGATGATGATCATACTAATATTTTAAGATTCTCGCTTATTATGTGGGAGATT
AAAATATATGGATATAATTTTTGCACTTACGATCCCATCTACTTATTATGTAGATTATAAAATA
GCAGGCTTGCATAAAAGCATAACATGATGTACCAAACTTGTTAGTCAAACAAAAAAAAAAAATA
TCCAAGAAGCTTTGAAGAACCATGGCGATGTCTCATGTCCAGCCTGTGCTTTTCTTCCTCGCAT
CACTCTTCTTCTTACTGGCTTTGTGCAGCGCCAACGATTTTGAATATTGCACCAGTAAGTATCG
ATTTGTTAAGTCTTCAATGTTCTATATTTTTTTTCGTGTGTTTAATTATAGAAAACCCCTATAA
AACCAATTAGTTTGACATATGAATTCAAATAAATAAGTGGATTTTTTTCTTTCTTAGAAAGATG
TATAGATCTAAGTGTTTTTTACCTGCAGAAAATGGACATGATTATGGTGTCGTCTCTTGGATCG
AGGTCTTTCGGGTTGGGCCTCAGGAAAACCCAACCCTCACTATAAATGTATTTGGTACTGCGAG
TAAGTAATAGTTTTGAATCTTTTGATGATTTTTCCAAATTTCAACTCTCTTTTTATTTTCTTTA
TATAGTTTCTAATATATTTTTTGATAAAATTCTTCGTGTGTATATACAGCGAAAGAAATATCCG
CGGGAACCCTTGTATATGTAGCCTATAGATCTGGGGATTTTACAGGCCTTTTAAAAACTTACGA
CCTATGTGATGTGAGTTTGGCATGTAACATTGATTCTGAGATTGAAGCTGGCGACGTGTTTGAC
TTCAGTCTTAAAGACGTTCTTTATGTTGGTTTTGATGAGGTAACTATTTTTAATACTCTTTGTA
TATGAATTTGAAGTTTCCTTAAGAAGTCCTAGGACCAATGTTTTCTCAAGTAATGCTTTTGGGT
TCATGATGTTCTTTGTTTCTCATTAATTCTTCTTTTTAACTTGGCAGGGAATCAAGTATTCCGT
ATCTTTGCGTCAAAAAACCGCAGAGGAGGAGGATCCAATAATAAAAATGTGTATCGACTTCAAA
GTACCTGCCTCAGCTTCTGCATTTGTCTCTATTTAGTCACGTTGGCTGATGAAAAGATGTTTCC
AACTCTTTCATTATATGACTCTTTCTCGCTTGCATTTTTCCTTTTTTATGTGTTGTCCAACAAA
TAAATCAAATCCTTGAACCGATATCGCTATAGATATTGCTTTGTTGTAATTTTGGCCTGATTAA
TATGAACCAACATGCCTTTCCTTGAATTTTCTGGTTGATATTGATCAAAAATAAAGTTTTTTAC
AGAGGAAATGTTTTACGAGTAGCGGATACGCATAATAAAACGCAGAATAGAACGGAAATATGAG
GAGACTTTCAAATAATTACAACAAAGTTGGATGATTATGCGATTTGTTTTGGTAACCAGTTGGA
TGATTTTACTAATTATATGATAGCTCTATAAATTCACAACTTACACTTTGCAATTCCCCAATCT
TGGTGACTAAGCTAAAACTAAATGAATGCTATCATTCTCCATGGTTTTTCACTTGATCAATTTT
TATTTTTCATTTTTGGTGATGAAATCATATTTCTTAGCTTCCGAAACTAATCATAAACTCTGCA
AGGTATAAAGAACCGGTGGTGTGCTAAACATTAGACAACTGGTTAAGCAACCTTACGCTAATAC
TTTTTCTTGCTAAGATACAACATCAAGAGTCAAGACATCTCCTTGAGATATATAGGCTGACTTT
GCTAGCCGTTAAATGTTAACTTTACGTTCTTTTCAAATCTGCAGATTTTAAATTATAAAAAAAA
GAAAAAAAATGTGTTTACAATAATTATCTTCGAGACGGACGTGATTGTGAATGAGAAAACTTGG
TAGTTAAGATATAATAAATAATCAATTATGATCATACTAATATTTAAGATTCTCGCTTATAATG
TGGGATAAAGAATTGACAATTGATCATACATTCATACTAATATTTTAAGATTCTCGCTCTTATA
ATGTGGGATAAAGAATTGACATTGATCATGTACTAATATCTTAAGATTCTCGCTGATAATGTGG
GAGATTAAAATAATGGATATAATGTATACAGGCTATAGCATCCTGCACTAACGATCCCATCTAC
TTATTCTGAAGATTATAAAATAGCAGGCTTGCATATATAGAAGAATAACATGTACCTAACTTTT
TAGTCAAACAATCAAAACAAAAAATCCAAGAAGCTTTGAAGAACCATGGCGATGTCTCATATCC
AGCCTGTGCTTTTCTTCCTTGCATCTCTCTTCTTCTTACCGGCTTTGTGCAGCGCCATCGATTT
TGAATATTGCACTAGTAAGTATCGGTTTGTTAATTGTTAAGTCTTCAGTGTTGTATATTATTTT
CGTGTGTTTAATTATAGAAAACACCTATAAATCAATTCAATCATTCATATAGGCCTTGATTTCT
TAGTTTGACATATGAACTCTATATCCAAGGGTTTTGTACCTAGTGGAACTCATCATAAGTTCTA
ACTTTCACGATCAATCGCTACGGCTGCTGCAGAAAATGGACACGATTACGGTAGCATCTCTCAG
ATCTGGGTCTCTCCCTCTGATGGGCCTCAGGAAAACCCAACCATCACTATACATTTATTCGGTT
CTGCAAGTAAGTAACAGTTTTGATGATCTTCCCAAAGTTTCAAGTCTCTTTTTTTCTTTATATA
GTTTCTAATATTTTCTTGATAAAATCTTTCTTATATATATAGGCAAAGACATATCCGCAGGAAC
CCTTGTGTATGTTACCTATAGATCTGGGGATTTTACAGGCCTTTTAAAAACTTACGACCTATGT
GATGTGAGTGCATGTAACCCTGAATATGTGATTGAAGCTGGCACCGACTTTGAGTTGACTCTTT
CCGACGTTCTTTATGTTGGTTTTGATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.636371542
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017