Detail information of 5_circ_ag.3


General Information
CircRNA Name 5_circ_ag.3
ID in PlantcircBase ath_circ_040100
Alias At_ciR2128
Organism Arabidpsis thaliana
Position chr5: 8031931-8036282  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.3 AT5G23820_circ_g.1 AT5G23820_circ_g.2 5_circ_ag.4 5_circ_ag.5 AT5G23850_circ_g.1 AT5G23860_circ_g.1 AT5G23860_circ_g.2 AT5G23870_circ_g.1 AT5G23870_circ_g.2 AT5G23880_circ_g.1 AT5G23880_circ_g.2 AT5G23880_circ_g.3 AT5G23880_circ_g.4 AT5G23880_circ_g.5 AT5G23880_circ_g.6 AT5G23880_circ_g.7 AT5G23890_circ_g.1 AT5G23890_circ_g.2 AT5G23890_circ_g.3 AT5G23890_circ_g.4 AT5G23900_circ_g.1 AT5G23900_circ_g.2 AT5G23900_circ_g.3 AT5G23900_circ_g.4 AT5G23910_circ_g.1 AT5G23910_circ_g.2 AT5G23910_circ_g.3 AT5G23910_circ_g.4 AT5G23910_circ_g.5 AT5G23910_circ_g.6 AT5G23910_circ_g.7 AT5G23910_circ_g.8 AT5G23910_circ_g.9 AT5G23910_circ_g.10 AT5G23960_circ_g.1 5_circ_ag.2 AT5G24000_circ_g.1 AT5G24000_circ_g.2 AT5G24000_circ_g.3 AT5G24000_circ_g.4 AT5G24030_circ_g.1 AT5G24060_circ_g.1 AT5G24060_circ_g.2 AT5G24080_circ_g.1 AT5G24090_circ_g.1 AT5G24120_circ_g.1 AT5G24120_circ_g.2 AT5G24120_circ_g.3 AT5G24120_circ_g.4 5_circ_ag.5 AT5G24150_circ_g.1 AT5G24150_circ_g.2 AT5G24150_circ_g.3 5_circ_ag.4 5_circ_ag.5 AT5G24150_circ_g.6 AT5G24150_circ_g.7 5_circ_ag.8 AT5G24150_circ_g.9 AT5G24150_circ_g.10 AT5G24150_circ_g.11 AT5G24150_circ_g.12 5_circ_ag.13 5_circ_ag.14 AT5G24150_circ_g.15 AT5G24160_circ_g.1 AT5G24165_circ_g.1 AT5G24165_circ_g.2 AT5G24170_circ_g.1 5_circ_igg.2 5_circ_igg.3 AT5G24206_circ_g.1 AT5G24210_circ_g.1 AT5G24210_circ_g.2 AT5G24230_circ_g.1 AT5G24260_circ_g.1 AT5G24260_circ_g.2 AT5G24260_circ_g.3 AT5G24270_circ_g.1 AT5G24270_circ_g.2 AT5G24280_circ_g.1 AT5G24280_circ_g.2 AT5G24280_circ_g.3 AT5G24280_circ_g.4 AT5G24290_circ_g.1 AT5G24290_circ_g.2 AT5G24300_circ_g.1 AT5G24300_circ_g.2 AT5G24310_circ_g.1 AT5G24314_circ_g.1 AT5G24318_circ_g.1 AT5G24320_circ_g.1 AT5G24330_circ_g.1 AT5G24330_circ_g.2 AT5G24350_circ_g.1 AT5G24350_circ_g.2 AT5G24350_circ_g.3 AT5G24350_circ_g.4 AT5G24350_circ_g.5 AT5G24350_circ_g.6 AT5G24350_circ_g.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 AT5G24352_circ_g.1 AT5G24360_circ_g.1 AT5G24400_circ_g.1 AT5G24430_circ_g.1 AT5G24430_circ_g.2 AT5G24430_circ_g.3 AT5G24430_circ_g.4 AT5G24430_circ_g.5 AT5G24450_circ_g.1 AT5G24450_circ_g.2 AT5G24450_circ_g.3 AT5G24450_circ_g.4 AT5G24450_circ_g.5 AT5G24450_circ_g.6 AT5G24450_circ_g.7 AT5G24450_circ_g.8 AT5G24470_circ_g.1 AT5G24490_circ_g.1 AT5G24490_circ_g.2 AT5G24490_circ_g.3 AT5G24490_circ_g.4 AT5G24490_circ_g.5 AT5G24490_circ_g.6 AT5G24520_circ_g.1 AT5G24530_circ_g.1 5_circ_igg.2 AT5G24580_circ_g.1 AT5G24580_circ_g.2 AT5G24580_circ_g.3 AT5G24590_circ_g.1 5_circ_ig.2 5_circ_igg.3 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 AT5G24620_circ_g.1 AT5G24620_circ_g.2 AT5G24620_circ_g.3 AT5G24620_circ_g.4 AT5G24620_circ_g.5 AT5G24630_circ_g.1 AT5G24630_circ_g.2 AT5G24660_circ_g.1 AT5G24670_circ_g.1 AT5G24670_circ_g.2 AT5G24670_circ_g.3 AT5G24670_circ_g.4 AT5G24670_circ_g.5 AT5G24670_circ_g.6 AT5G24670_circ_g.7 AT5G24670_circ_g.8 AT5G24670_circ_g.9 AT5G24680_circ_g.1 AT5G24690_circ_g.1 AT5G24690_circ_g.2 AT5G24690_circ_g.3 AT5G24690_circ_g.4
Support reads 4/25
Tissues leaf/root, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGGACACGATTACGGTAGCATCTCTCAGATCTGGGTCTCTCCCTCTGATGGGCCTCAGGAAA
ACCCAACCATCACTATACATTTATTCGGTTCTGCAAgcaaaaacatccccgcgggaacccttgt
gtacgtagcctttagagatggggaatttaccggccttttaaaaacttacaacctttgtgatgtg
agtgcatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGGAATTTACCGGCCT
TTTAAAAACTTACAACCTTTGTGATGTGAGTGCATGTAACAATGAAGCTGAGATTGAAGCTGGC
ACCAACTTTGAGTTAACTCTTTCCGACGTTCTTTATGTTGGTTATGATGAGGTAACTACATTTC
TACTCTTAGCATAGGAAAATAAAAAGCATGAATGAATGTGAATTTTCCTTAATCCTAGGACCAA
TGTTTCAAACCCAAGGTTGGACTAATTAAATAACCGTAATTGACCGGCAAAACCCCTAAAACTA
GTACAACCGGTTCACATTGGTTTATTTATTTTTCATTTTCATTTTTATTTTTATTTTTTCAAGA
CTTGGCTTTATGCTTTAACATCACATCTTCTATTAGAAATTTTTTATACTTCCTTTTTCTCAAC
ACGTTTAATTTTATTTTATATTTCTTATAAGTTATTTAGGGTATACTATAATAATTCTGTTGAT
ATTTAAGATTTCACTTTGATATTGTTATTTTGAGTTTAACTACAATTCCATGCTTACAAAGTTA
ACTTCAAAAGTAATGTTTTTGGTTTCATGATGTTATATATTTCTCATTAACTCTACTTCTTTTC
CATTTTATCATGTGTTGTATATCTTAGTGATAAATATAAAAACATTTTATGTATATTATACTAT
TAGTGAAATTAAATATAAATAATCAAACCGGTCTGACTTGATTCACATTACTTGGCAGGAAATC
AAGTACTCGGTATCTTTGCGCCGAAAGACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTG
TCGACTTCAAAGTACCTGCCCCAGCTCCTGCATTTGTCTCTATTTAGTCAAGTTGGCTGATGAA
AAGATGTTTCCAAGTCTCTTTTGATTATATGAGTCTCTCTCGCAACTTTGCTTTTCCTTTTCCC
TTTTTGTGTTGTCCAACAAATAAATTAAAATCTTGGACCGATATCGATAGCGATATGAACAAGC
AATCGAGCATGTCTTTTCTTCGATTTACTGGTTGATATTAATCAAAAATAAAGTTTTTTACATA
GGAAATGTTTTACTAGTAGCCCATGAGCATAATAAAAGCAGAGAGAACAGAGAAATATGAGGAG
ACTTTCAAATAATTACAACAAAGTTGGATGATTATCCTATTTTATATGATTTTACCAATCATAA
AGCTCTACAAATTAACAATTAATCTAGGTGACTAAAACAAAATGAATGCTATCATTCTGCATGG
TTATTTCACTTAGCCGTTTTTTTTTTCATTTTTGGTGAGAACAGAGAAATATCTCATTTTGTTG
CTTCCGAAACTATCATAAAGTATACACTGCAAGGTATAAAGAACCGGTCCACAAATACAGTGAA
ATTGAAGGTGTGCTAAACATTAGATAACTGGTTATGCACCCTTACGCTAACACTTTTTCTTGCT
AAGATACAACATCAAGAGTCAAGACATTTCCTTGAGATATATAGGCCGACTTTGCTAGCCGTTA
AAATGTTAACTTTACGTTCTTTTCAAATCTGCAGATTTTATAATAATACAGTTCTTCTAGACGG
ATCGGTCTCTCCCAGATAAAATCCACGTGATTGTGAATGAGAAAAATTGGTAGGTAAGGTAATA
AAAAATTGATGATGATCATACTAATATTTTAAGATTCTCGCTTATTATGTGGGAGATTAAAATA
TATGGATATAATTTTTGCACTTACGATCCCATCTACTTATTATGTAGATTATAAAATAGCAGGC
TTGCATAAAAGCATAACATGATGTACCAAACTTGTTAGTCAAACAAAAAAAAAAAATATCCAAG
AAGCTTTGAAGAACCATGGCGATGTCTCATGTCCAGCCTGTGCTTTTCTTCCTCGCATCACTCT
TCTTCTTACTGGCTTTGTGCAGCGCCAACGATTTTGAATATTGCACCAGTAAGTATCGATTTGT
TAAGTCTTCAATGTTCTATATTTTTTTTCGTGTGTTTAATTATAGAAAACCCCTATAAAACCAA
TTAGTTTGACATATGAATTCAAATAAATAAGTGGATTTTTTTCTTTCTTAGAAAGATGTATAGA
TCTAAGTGTTTTTTACCTGCAGAAAATGGACATGATTATGGTGTCGTCTCTTGGATCGAGGTCT
TTCGGGTTGGGCCTCAGGAAAACCCAACCCTCACTATAAATGTATTTGGTACTGCGAGTAAGTA
ATAGTTTTGAATCTTTTGATGATTTTTCCAAATTTCAACTCTCTTTTTATTTTCTTTATATAGT
TTCTAATATATTTTTTGATAAAATTCTTCGTGTGTATATACAGCGAAAGAAATATCCGCGGGAA
CCCTTGTATATGTAGCCTATAGATCTGGGGATTTTACAGGCCTTTTAAAAACTTACGACCTATG
TGATGTGAGTTTGGCATGTAACATTGATTCTGAGATTGAAGCTGGCGACGTGTTTGACTTCAGT
CTTAAAGACGTTCTTTATGTTGGTTTTGATGAGGTAACTATTTTTAATACTCTTTGTATATGAA
TTTGAAGTTTCCTTAAGAAGTCCTAGGACCAATGTTTTCTCAAGTAATGCTTTTGGGTTCATGA
TGTTCTTTGTTTCTCATTAATTCTTCTTTTTAACTTGGCAGGGAATCAAGTATTCCGTATCTTT
GCGTCAAAAAACCGCAGAGGAGGAGGATCCAATAATAAAAATGTGTATCGACTTCAAAGTACCT
GCCTCAGCTTCTGCATTTGTCTCTATTTAGTCACGTTGGCTGATGAAAAGATGTTTCCAACTCT
TTCATTATATGACTCTTTCTCGCTTGCATTTTTCCTTTTTTATGTGTTGTCCAACAAATAAATC
AAATCCTTGAACCGATATCGCTATAGATATTGCTTTGTTGTAATTTTGGCCTGATTAATATGAA
CCAACATGCCTTTCCTTGAATTTTCTGGTTGATATTGATCAAAAATAAAGTTTTTTACAGAGGA
AATGTTTTACGAGTAGCGGATACGCATAATAAAACGCAGAATAGAACGGAAATATGAGGAGACT
TTCAAATAATTACAACAAAGTTGGATGATTATGCGATTTGTTTTGGTAACCAGTTGGATGATTT
TACTAATTATATGATAGCTCTATAAATTCACAACTTACACTTTGCAATTCCCCAATCTTGGTGA
CTAAGCTAAAACTAAATGAATGCTATCATTCTCCATGGTTTTTCACTTGATCAATTTTTATTTT
TCATTTTTGGTGATGAAATCATATTTCTTAGCTTCCGAAACTAATCATAAACTCTGCAAGGTAT
AAAGAACCGGTGGTGTGCTAAACATTAGACAACTGGTTAAGCAACCTTACGCTAATACTTTTTC
TTGCTAAGATACAACATCAAGAGTCAAGACATCTCCTTGAGATATATAGGCTGACTTTGCTAGC
CGTTAAATGTTAACTTTACGTTCTTTTCAAATCTGCAGATTTTAAATTATAAAAAAAAGAAAAA
AAATGTGTTTACAATAATTATCTTCGAGACGGACGTGATTGTGAATGAGAAAACTTGGTAGTTA
AGATATAATAAATAATCAATTATGATCATACTAATATTTAAGATTCTCGCTTATAATGTGGGAT
AAAGAATTGACAATTGATCATACATTCATACTAATATTTTAAGATTCTCGCTCTTATAATGTGG
GATAAAGAATTGACATTGATCATGTACTAATATCTTAAGATTCTCGCTGATAATGTGGGAGATT
AAAATAATGGATATAATGTATACAGGCTATAGCATCCTGCACTAACGATCCCATCTACTTATTC
TGAAGATTATAAAATAGCAGGCTTGCATATATAGAAGAATAACATGTACCTAACTTTTTAGTCA
AACAATCAAAACAAAAAATCCAAGAAGCTTTGAAGAACCATGGCGATGTCTCATATCCAGCCTG
TGCTTTTCTTCCTTGCATCTCTCTTCTTCTTACCGGCTTTGTGCAGCGCCATCGATTTTGAATA
TTGCACTAGTAAGTATCGGTTTGTTAATTGTTAAGTCTTCAGTGTTGTATATTATTTTCGTGTG
TTTAATTATAGAAAACACCTATAAATCAATTCAATCATTCATATAGGCCTTGATTTCTTAGTTT
GACATATGAACTCTATATCCAAGGGTTTTGTACCTAGTGGAACTCATCATAAGTTCTAACTTTC
ACGATCAATCGCTACGGCTGCTGCAGAAAATGGACACGATTACGGTAGCATCTCTCAGATCTGG
GTCTCTCCCTCTGATGGGCCTCAGGAAAACCCAACCATCACTATACATTTATTCGGTTCTGCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.773644734
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017