Detail information of 5_circ_igg.3


General Information
CircRNA Name 5_circ_igg.3
ID in PlantcircBase ath_circ_040169
Alias NA
Organism Arabidpsis thaliana
Position chr5: 8210759-8213066  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.3 AT5G23820_circ_g.1 AT5G23820_circ_g.2 5_circ_ag.3 5_circ_ag.4 5_circ_ag.5 AT5G23850_circ_g.1 AT5G23860_circ_g.1 AT5G23860_circ_g.2 AT5G23870_circ_g.1 AT5G23870_circ_g.2 AT5G23880_circ_g.1 AT5G23880_circ_g.2 AT5G23880_circ_g.3 AT5G23880_circ_g.4 AT5G23880_circ_g.5 AT5G23880_circ_g.6 AT5G23880_circ_g.7 AT5G23890_circ_g.1 AT5G23890_circ_g.2 AT5G23890_circ_g.3 AT5G23890_circ_g.4 AT5G23900_circ_g.1 AT5G23900_circ_g.2 AT5G23900_circ_g.3 AT5G23900_circ_g.4 AT5G23910_circ_g.1 AT5G23910_circ_g.2 AT5G23910_circ_g.3 AT5G23910_circ_g.4 AT5G23910_circ_g.5 AT5G23910_circ_g.6 AT5G23910_circ_g.7 AT5G23910_circ_g.8 AT5G23910_circ_g.9 AT5G23910_circ_g.10 AT5G23960_circ_g.1 5_circ_ag.2 AT5G24000_circ_g.1 AT5G24000_circ_g.2 AT5G24000_circ_g.3 AT5G24000_circ_g.4 AT5G24030_circ_g.1 AT5G24060_circ_g.1 AT5G24060_circ_g.2 AT5G24080_circ_g.1 AT5G24090_circ_g.1 AT5G24120_circ_g.1 AT5G24120_circ_g.2 AT5G24120_circ_g.3 AT5G24120_circ_g.4 5_circ_ag.5 AT5G24150_circ_g.1 AT5G24150_circ_g.2 AT5G24150_circ_g.3 5_circ_ag.4 5_circ_ag.5 AT5G24150_circ_g.6 AT5G24150_circ_g.7 5_circ_ag.8 AT5G24150_circ_g.9 AT5G24150_circ_g.10 AT5G24150_circ_g.11 AT5G24150_circ_g.12 5_circ_ag.13 5_circ_ag.14 AT5G24150_circ_g.15 AT5G24160_circ_g.1 AT5G24165_circ_g.1 AT5G24165_circ_g.2 AT5G24170_circ_g.1 5_circ_igg.2 AT5G24206_circ_g.1 AT5G24210_circ_g.1 AT5G24210_circ_g.2 AT5G24230_circ_g.1 AT5G24260_circ_g.1 AT5G24260_circ_g.2 AT5G24260_circ_g.3 AT5G24270_circ_g.1 AT5G24270_circ_g.2 AT5G24280_circ_g.1 AT5G24280_circ_g.2 AT5G24280_circ_g.3 AT5G24280_circ_g.4 AT5G24290_circ_g.1 AT5G24290_circ_g.2 AT5G24300_circ_g.1 AT5G24300_circ_g.2 AT5G24310_circ_g.1 AT5G24314_circ_g.1 AT5G24318_circ_g.1 AT5G24320_circ_g.1 AT5G24330_circ_g.1 AT5G24330_circ_g.2 AT5G24350_circ_g.1 AT5G24350_circ_g.2 AT5G24350_circ_g.3 AT5G24350_circ_g.4 AT5G24350_circ_g.5 AT5G24350_circ_g.6 AT5G24350_circ_g.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 AT5G24352_circ_g.1 AT5G24360_circ_g.1 AT5G24400_circ_g.1 AT5G24430_circ_g.1 AT5G24430_circ_g.2 AT5G24430_circ_g.3 AT5G24430_circ_g.4 AT5G24430_circ_g.5 AT5G24450_circ_g.1 AT5G24450_circ_g.2 AT5G24450_circ_g.3 AT5G24450_circ_g.4 AT5G24450_circ_g.5 AT5G24450_circ_g.6 AT5G24450_circ_g.7 AT5G24450_circ_g.8 AT5G24470_circ_g.1 AT5G24490_circ_g.1 AT5G24490_circ_g.2 AT5G24490_circ_g.3 AT5G24490_circ_g.4 AT5G24490_circ_g.5 AT5G24490_circ_g.6 AT5G24520_circ_g.1 AT5G24530_circ_g.1 5_circ_igg.2 AT5G24580_circ_g.1 AT5G24580_circ_g.2 AT5G24580_circ_g.3 AT5G24590_circ_g.1 5_circ_ig.2 5_circ_igg.3 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 AT5G24620_circ_g.1 AT5G24620_circ_g.2 AT5G24620_circ_g.3 AT5G24620_circ_g.4 AT5G24620_circ_g.5 AT5G24630_circ_g.1 AT5G24630_circ_g.2 AT5G24660_circ_g.1 AT5G24670_circ_g.1 AT5G24670_circ_g.2 AT5G24670_circ_g.3 AT5G24670_circ_g.4 AT5G24670_circ_g.5 AT5G24670_circ_g.6 AT5G24670_circ_g.7 AT5G24670_circ_g.8 AT5G24670_circ_g.9 AT5G24680_circ_g.1 AT5G24690_circ_g.1 AT5G24690_circ_g.2 AT5G24690_circ_g.3 AT5G24690_circ_g.4
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTACAATCACAGGACGAAACATATCTAAGTAAATACATTGGTTACCTCTTTACTTTTGTATGC
AAGACACCATTTTCGCTTGTAGTGGCTTGAATTTCTctgacctctatatgctcttttggctact
gaatcgcctccggaaattaggttatgtacagctcaaagatacatgacctctcatttgatcttgg
ctactgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGACCTCTATATGCTCTTTTGGCTACTGAATCGCCTCCGGAAATTAGGTTATGTACAGCTCAA
AGATACATGACCTCTCATTTGATCTTGGCTACTGAAGCACTTTCTTGAACTTTTGTTCTTCGTA
GATCCACTCTCTAGTATCCAAAACATTTTGTTAGCAATTATTATGGGCACAGACAACAAAGTGA
AACTACAAAATTATCGCCAAAGGAAAAGAACAAAACATGGTAAGAATCTTACAGAGCCTGACTG
GTTGTTAATTTTCTGTTATTTAATCTTGACAGGTTATGCTGTGTAATGAAGAACCCGACTGAAA
AACAGAAATCATCAAGTTAGGAAAACAATCTCACTTAATATGAGTATTAACTGCGAAACGTTTT
GAGACAACATTAAGATAACCCAAATCATGTATGCAGCAAATTTGATTCAAACAGTGTTTCAACA
CTCACATTTGCTCCTGACACGGAATTGAGATATGAGTTGTCACCTGATTGCTGTATCATTTACC
AATCAGATTGATTATGTTAGAGCTCGGAAATGGAGACAAGAAACATATAAAGATATAAAGATAG
ATAGCGAAATAAACAAAGTGGTATAACTATAGATTCTTCTTGCATGACTTTCTTCTTCACAGAT
ACAACGAAAGTGACACCATAGTCATTAGTCCAAACCCCATTTATCCGGATCATGTAATTATGAT
GGTTTCCTTCAAGTCCAAGCCACAACCAAAATGATGCAATGGATAAGAAAAAAAAAACAGACAT
ACAAATAAAGTTAGGAAAGAAAGCCACATGTAATTTCTGGAAAAATCATTCTACAACCAAAATT
AGTGGTGTAAGAGAAGATGAAAATCATTAGTCACCTTAGTATTGGTCAGGAAACATTTGGCTGC
CTCATGTGTAAAGGACTCTCCAACAACTGAAATCCAATCCATGACATCATTAGTATTTTACCTG
GGAAATCAAGATGTGATAGAGAAATATGTTGTGCTTTAATTAGTTCCTGCAAGTTATAAATCAC
TTTAACACATCAGACATATCCAGAAAAAGATTTTCTCAATGTAAGTTTAAATTTGACTCTTTTC
CGCTCAAGTATCATGTATCTTAGTACAAAATTATTATGTTAGCAGTCTACTAGATAGCAAGAAC
ATAAAAAATACAAACTCAGAAACGAGACGAAGATGTTTACCTACCTGATCTTTTTTCCGAGTAG
ACTGAATCAATTTCTTATGTTTAGTTATTTTCAGCTTAAGAATCTTCTATCTTGAATTGATTAA
AAAAGAAATACATTCTATAAGCAATACACTAAATACAAAAGACTATATAATAAAACCACAAAAA
TAATGCTGATGTAGAGAAAATCTTACTAAGTATGATCCAAGTCAGGATAGGTGTAAGAGAAGAT
GAAGAAAATCAGTCACCTTAAGACTGAGGAAATATTTGGTTGTCTCATTGGCAAAGGATTCTCC
AACAACAAAAACTCATCCCTGATATTATTAATATTGTACCTTGCGAATCAAGATGTAATCTAGA
TATATGATATGGGACTAGTTCTTACAAGTTATAGACCACTTGAACACGTCAGACGTTTCCAGCA
AAAGTGTGTTTATTTACCTGACCTTCTTCTTTAGGGGAGACTGAATGGCTTTCTTAAATTAGGT
TATTTTCCGCTTAAGATCCGTCTACCTTGTTATAAAACCATTCTATTAGCAGTATAATAAATAC
ACAGGACCGTAAAAAACAAATATGAAAAGAGACAAAGATAGTTTATCTACCTGACACTTCCTTT
TTCTTAGTCGACTGAATCACTTTCTTGTTCAATTATTTTCAGCCTAAGAGTCCACCATCTTGAT
ACAAAACCATTCTATTAGTGGTATACTTAATACAAGACTAAAAAATAAAACCACAAAAATAATG
CTAATGGAGAACGAAATCTTACGAAGTTTGATCCATCCCGGGATTTGACTGATTTGCTCATGTT
GTTTCTATTAATCTTGACAATGAAACAATGTCCAAAGCTGAAATATTGAACATGTTTATTAAGT
ATGACAAAAACCAGCTTTTACGATTGGTTTTGTCCTTTCTCAAGTATGTATTCATATGAAAATA
TGAAGCAAAAGTAATTAAATGAGAAGAAATCAAGAAGCTTTACCCTAAAACTTTAGTGTTTTTC
TTGGATTTTGAATCATCACCGATACCCCTTCACTTACAATCACAGGACGAAACATATCTAAGTA
AATACATTGGTTACCTCTTTACTTTTGTATGCAAGACACCATTTTCGCTTGTAGTGGCTTGAAT
TTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.412697723
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017