Detail information of AT5G24150_circ_g.7


General Information
CircRNA Name AT5G24150_circ_g.7
ID in PlantcircBase ath_circ_040155
Alias NA
Organism Arabidpsis thaliana
Position chr5: 8173686-8174982  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT5G24150
Parent gene annotation Squalene epoxidase 5
Parent gene strand -
Alternative splicing 5_circ_ag.3 AT5G23820_circ_g.1 AT5G23820_circ_g.2 5_circ_ag.3 5_circ_ag.4 5_circ_ag.5 AT5G23850_circ_g.1 AT5G23860_circ_g.1 AT5G23860_circ_g.2 AT5G23870_circ_g.1 AT5G23870_circ_g.2 AT5G23880_circ_g.1 AT5G23880_circ_g.2 AT5G23880_circ_g.3 AT5G23880_circ_g.4 AT5G23880_circ_g.5 AT5G23880_circ_g.6 AT5G23880_circ_g.7 AT5G23890_circ_g.1 AT5G23890_circ_g.2 AT5G23890_circ_g.3 AT5G23890_circ_g.4 AT5G23900_circ_g.1 AT5G23900_circ_g.2 AT5G23900_circ_g.3 AT5G23900_circ_g.4 AT5G23910_circ_g.1 AT5G23910_circ_g.2 AT5G23910_circ_g.3 AT5G23910_circ_g.4 AT5G23910_circ_g.5 AT5G23910_circ_g.6 AT5G23910_circ_g.7 AT5G23910_circ_g.8 AT5G23910_circ_g.9 AT5G23910_circ_g.10 AT5G23960_circ_g.1 5_circ_ag.2 AT5G24000_circ_g.1 AT5G24000_circ_g.2 AT5G24000_circ_g.3 AT5G24000_circ_g.4 AT5G24030_circ_g.1 AT5G24060_circ_g.1 AT5G24060_circ_g.2 AT5G24080_circ_g.1 AT5G24090_circ_g.1 AT5G24120_circ_g.1 AT5G24120_circ_g.2 AT5G24120_circ_g.3 AT5G24120_circ_g.4 5_circ_ag.5 AT5G24150_circ_g.1 AT5G24150_circ_g.2 AT5G24150_circ_g.3 5_circ_ag.4 5_circ_ag.5 AT5G24150_circ_g.6 5_circ_ag.8 AT5G24150_circ_g.9 AT5G24150_circ_g.10 AT5G24150_circ_g.11 AT5G24150_circ_g.12 5_circ_ag.13 5_circ_ag.14 AT5G24150_circ_g.15 AT5G24160_circ_g.1 AT5G24165_circ_g.1 AT5G24165_circ_g.2 AT5G24170_circ_g.1 5_circ_igg.2 5_circ_igg.3 AT5G24206_circ_g.1 AT5G24210_circ_g.1 AT5G24210_circ_g.2 AT5G24230_circ_g.1 AT5G24260_circ_g.1 AT5G24260_circ_g.2 AT5G24260_circ_g.3 AT5G24270_circ_g.1 AT5G24270_circ_g.2 AT5G24280_circ_g.1 AT5G24280_circ_g.2 AT5G24280_circ_g.3 AT5G24280_circ_g.4 AT5G24290_circ_g.1 AT5G24290_circ_g.2 AT5G24300_circ_g.1 AT5G24300_circ_g.2 AT5G24310_circ_g.1 AT5G24314_circ_g.1 AT5G24318_circ_g.1 AT5G24320_circ_g.1 AT5G24330_circ_g.1 AT5G24330_circ_g.2 AT5G24350_circ_g.1 AT5G24350_circ_g.2 AT5G24350_circ_g.3 AT5G24350_circ_g.4 AT5G24350_circ_g.5 AT5G24350_circ_g.6 AT5G24350_circ_g.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 AT5G24352_circ_g.1 AT5G24360_circ_g.1 AT5G24400_circ_g.1 AT5G24430_circ_g.1 AT5G24430_circ_g.2 AT5G24430_circ_g.3 AT5G24430_circ_g.4 AT5G24430_circ_g.5 AT5G24450_circ_g.1 AT5G24450_circ_g.2 AT5G24450_circ_g.3 AT5G24450_circ_g.4 AT5G24450_circ_g.5 AT5G24450_circ_g.6 AT5G24450_circ_g.7 AT5G24450_circ_g.8 AT5G24470_circ_g.1 AT5G24490_circ_g.1 AT5G24490_circ_g.2 AT5G24490_circ_g.3 AT5G24490_circ_g.4 AT5G24490_circ_g.5 AT5G24490_circ_g.6 AT5G24520_circ_g.1 AT5G24530_circ_g.1 5_circ_igg.2 AT5G24580_circ_g.1 AT5G24580_circ_g.2 AT5G24580_circ_g.3 AT5G24590_circ_g.1 5_circ_ig.2 5_circ_igg.3 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 AT5G24620_circ_g.1 AT5G24620_circ_g.2 AT5G24620_circ_g.3 AT5G24620_circ_g.4 AT5G24620_circ_g.5 AT5G24630_circ_g.1 AT5G24630_circ_g.2 AT5G24660_circ_g.1 AT5G24670_circ_g.1 AT5G24670_circ_g.2 AT5G24670_circ_g.3 AT5G24670_circ_g.4 AT5G24670_circ_g.5 AT5G24670_circ_g.6 AT5G24670_circ_g.7 AT5G24670_circ_g.8 AT5G24670_circ_g.9 AT5G24680_circ_g.1 AT5G24690_circ_g.1 AT5G24690_circ_g.2 AT5G24690_circ_g.3 AT5G24690_circ_g.4
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G24150.1:4
AT5G24150.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTAGAGAGCATGAGTCGTCCTCCTGGTTGCATAAACTCACCCATGATTCTCTCTGGTTCTCT
CAGGTCCCTCTCTATTACATGGACTCGACGCCCGTCctgaggagcaatagtgttcttcacgaaa
gtagccatttcaccatttgaaatagaaggaatgttgttggggagaacttcaaaaacacaacgaa
cgtcggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGGAGCAATAGTGTTCTTCACGAAAGTAGCCATTTCACCATTTGAAATAGAAGGAATGTTG
TTGGGGAGAACTTCAAAAACACAACGAACGTCGGTGCTGCTGATTTGATACAACATGGTGAAGG
AGGGTTTAGACATTATCAACTTTAACTTTTCGGGTTCTTCAAGCTGACAGTTCTTTGAGATAAA
ACCAACTTGGTATGACAGAACCTCCGCCTACATCAGAGTAAGTAACATCAATTATGTCATTAGC
GTGTATAGCAAAAGATTTATGACATATCTGTTTAATTGAGCATATATACTCACATTGTTGTCAT
TAAGAGACCGGCGAAGGTTTGAGTAGCAACCGTCGCATACTACAGTGAGAGGTGCCAAGGCTGT
TGTTTCTTCGCCTGCGCTATTTTTGTATGTCACTCCTTTGATCACTCCTTTTTCTTCTATCAAA
GACTTCACCGTTCCTTCTTCCAGGCGCACACTACCAATAAATGTTTGGTGCAGTGTATTGATTA
GCGTTATAAAACAAACCATTCCTATTGTCAAGCTTATTATATAGTAGCTATTGTCCAATGTTTA
AAAAATATGAGGTGCTAACTGAAGGGATTTTTTTCCTTATTTATTACTTCATATATATTCAATT
AGGTTTATTTTGTTTAACCTAATATATTTTATATTTATTTTAAATTAAATTTTTATTTAATTAG
AATTATATTTGTTTCTTTTAATTTTATTTGTAGTCAGTTCGTTTTGTAGTTAGTTATTTGAGAT
TTGAGAAATCTAAGGACTGAAAACTTTAGTCGTTGATCGCTACGATTAATCGGTGTATCCACTG
TCAAACGAACAACAACACTTGGTCGCTGACTTCCTAACGAACATGACCATAATACTTACTTGGG
AAGAGAAGAAGCCTTTTGCCGCAATCGTTGGACGAATCGGCCATTGTGAAAAGATCGAGCCGAA
GGATCAAAAGGAAAATTGTTGTTGTCCACGGGAAAAGATGCGACTGCTTCTTTTCCGTCCTTAT
AAACTGTCATGCCCGTGGCTTTTTGGGCATCTATTCCCTCCAAACAATCTATACATATATATAT
ATATATATATAATCGCAAAAATATGATCATGAAACTAAGACACAATTATATGACTTTCTGATTT
AATTACATAAATGAAACTGAAATAGAGACCGACCTTCAAGACCAAGCTTAGAGAGCATGAGTCG
TCCTCCTGGTTGCATAAACTCACCCATGATTCTCTCTGGTTCTCTCAGGTCCCTCTCTATTACA
TGGACTCGACGCCCGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.140081862
Functional Information
Coding potential Y
Potential coding position 8174929-8173688(-)
Potential amino acid sequence MGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHN
GRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNL
RRSLNDNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPS
ISNGEMATFVKNTIAPQDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQK
ATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIE
EKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPE
KLKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSISNGEMATFVKNTIAPQDGRRVHVIERDL
REPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPS
ARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCD
GCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPSFTMLYQISSTDVRCVFEVL
PNNIPSISNGEMATFVKNTIAPQDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLE
GIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVRLEEGT
VKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNC
QLEEPEKLKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSISNGEMATFVKNTIAPQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017