Detail information of BGIOSGA014529_circ_g.3


General Information
CircRNA Name BGIOSGA014529_circ_g.3
ID in PlantcircBase osi_circ_014683
Alias Chr04:29188384_29188929(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27424097-27424642  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014529
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014529_circ_g.1 BGIOSGA014529_circ_g.2 BGIOSGA014529_circ_g.4 BGIOSGA014529_circ_g.5 BGIOSGA014529_circ_g.6 BGIOSGA014529_circ_g.7 BGIOSGA014529_circ_g.8 BGIOSGA014529_circ_g.9 BGIOSGA014529_circ_g.10 BGIOSGA014529_circ_g.11 BGIOSGA014529_circ_g.12 BGIOSGA014529_circ_g.13 BGIOSGA014529_circ_g.14 BGIOSGA014529_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CA-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTGTACTTAAAAGTTAAATACACTTGCTTAAAGTTCATTCCATGGATAAGAGCGTAAACTGT
AAAGAGCATAAACTATCTAGAATCTTAGTAGCTCACtgtgattgatatatacaatattgtgggt
gttttcttattctttctccattccagatgaactaatatctggcactgttggtgaacaaatgtat
ggaattca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTGATTGATATATACAATATTGTGGGTGTTTTCTTATTCTTTCTCCATTCCAGATGAACTAAT
ATCTGGCACTGTTGGTGAACAAATGTATGGAATTCAAAATTTGCAGCAATATTATATTATCAGG
ATCTAATTCTAATAAATATCATGTACTTTAGTAAACCATATCTTAATTTAACCAAAGCAGCTCA
AGAACAAATAGTGCAACTATACGTTTCAACATACAACAGCAACTTCATATTCTTGGCAAACCTT
TGCTCTTCCAATGATGAATATACAACTGAATGAATTCAAAATAGTATCAATGAATTAGCAGCAA
TTTGACAGCAATTCTAGCAGTAAACTACCATGGATTCTGAAGAACTAAATGCAAGCATAACAAA
ATTTCTAACAGCCTACCTGCCCAATTGTCCAAACAAATCTCTAGTATGAAAACGACTGACTACA
GTGTACTTAAAAGTTAAATACACTTGCTTAAAGTTCATTCCATGGATAAGAGCGTAAACTGTAA
AGAGCATAAACTATCTAGAATCTTAGTAGCTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021