Detail information of BGIOSGA014529_circ_g.14


General Information
CircRNA Name BGIOSGA014529_circ_g.14
ID in PlantcircBase osi_circ_005676
Alias 4:27433285|27433983
Organism Oryza sativa ssp. indica
Position chr4: 27433285-27433983  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA014529
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014529_circ_g.1 BGIOSGA014529_circ_g.2 BGIOSGA014529_circ_g.3 BGIOSGA014529_circ_g.4 BGIOSGA014529_circ_g.5 BGIOSGA014529_circ_g.6 BGIOSGA014529_circ_g.7 BGIOSGA014529_circ_g.8 BGIOSGA014529_circ_g.9 BGIOSGA014529_circ_g.10 BGIOSGA014529_circ_g.11 BGIOSGA014529_circ_g.12 BGIOSGA014529_circ_g.13 BGIOSGA014529_circ_g.15
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA014529-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGTAATGATATGCAAGGCACATCAAGTTGCCCTTGCACGATCCTCAAACTGATATGTCTTAA
AGCTCGCCTTGTCAATGTATCCATAGATTCAGAGATctccacaagctgcccatcttcgagaata
tcgaacacgatgcaaagtaatttctcatatagtctaaagttgagatgatagctctggatccaat
gataggtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACAAGCTGCCCATCTTCGAGAATATCGAACACGATGCAAAGTAATTTCTCATATAGTCTA
AAGTTGAGATGATAGCTCTGGATCCAATGATAGGTCTCGCCTTTAAGGTTGAATTTCTTTGGGG
CTTCACATAATTTTGCGTTGTATCTTTCAATGATAGTCAATACCTCAACAGGCCCATCAGGGAC
ACTAACTACCCAATCCTGGAATGATTGCCGGCATAAATATAGAAAGAGCTCAGTATTAGTATTA
AACCTAATTTGGAAAGAGATCAAACTTGATGTGGCTTCCGAAACACAAGTAAAATTACTTAACC
AATAAGAAAAGATAAGAAACACGAAGATTAGCTCTTGCCTCTGTATCTCTTATCTTAGAGAGAA
CTATCCGCAATGTTTCACTCATACCATACTCACGCGATCCTGGGAAGAGAAGTAATTCTTCGAG
AACATTTGCCTGGATATCAAAATTATAAACAATAATTAGGACAAACTCCCATGCTATAGGCACG
AATAAATAAACTTGCTTGCCTGTCTTCTCTGCCACTGCACTCGCAGTCTTTCTGTAGGGAAATC
AGATTTCCCAACAGAACTTAAGAGCTGTAATGATATGCAAGGCACATCAAGTTGCCCTTGCACG
ATCCTCAAACTGATATGTCTTAAAGCTCGCCTTGTCAATGTATCCATAGATTCAGAGAT
Conservation Information
Conserved circRNAs osa_circ_024939*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021