Detail information of BGIOSGA014529_circ_g.7


General Information
CircRNA Name BGIOSGA014529_circ_g.7
ID in PlantcircBase osi_circ_005670
Alias 4:27429377|27429979
Organism Oryza sativa ssp. indica
Position chr4: 27429377-27429979  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014529
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014529_circ_g.1 BGIOSGA014529_circ_g.2 BGIOSGA014529_circ_g.3 BGIOSGA014529_circ_g.4 BGIOSGA014529_circ_g.5 BGIOSGA014529_circ_g.6 BGIOSGA014529_circ_g.8 BGIOSGA014529_circ_g.9 BGIOSGA014529_circ_g.10 BGIOSGA014529_circ_g.11 BGIOSGA014529_circ_g.12 BGIOSGA014529_circ_g.13 BGIOSGA014529_circ_g.14 BGIOSGA014529_circ_g.15
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014529-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATTTAACTCACATGCTTATATGCAGCTTGAATGGATCTGACAACAAGAATGTGAATCAACTT
AGATTCTTGTGTAGCATCTAGTGGGGTCCCAATGAGcatgtatggctttaaatatttggacagc
aaagaaccaacagctccctcattcattaagtaaagcttcttagctacacaaagctcaaaattat
ttgttgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTATGGCTTTAAATATTTGGACAGCAAAGAACCAACAGCTCCCTCATTCATTAAGTAAAGC
TTCTTAGCTACACAAAGCTCAAAATTATTTGTTGCTGCCAGTATCTCTTTCAAACTTTCTGAAT
TATCCATCCTTTCCAAAAATAGCTCCTTGAAACCAATGAGAATAGTAAACATCATTTGAAGTGG
ACAGAACAAACTTGTTACAGCTTAGAAGGGAGTTACTAGACTAACCAGCTGTTGCCCATACAGT
AGGTGCAAGAGAACCAGAGCTACTCTTCCAGCTTCAGGGTATCGTTTACAAAGTGTTGGACTGA
AAATAGTACACTCTTTCTCCGCCACTAGCTTTAATTCGTTTGCAAGAATTATTAATGGATGCTT
AAATTCTGCCTTTGATTGGCAATCTGATGAAATTAGGGCCTAATGAAGCATGGTATGATATCAG
AAATACAATAAATATTTTATTACCAAATGGATTGTTATTTAAGTGGCCCATCAGATGATTTAAC
TCACATGCTTATATGCAGCTTGAATGGATCTGACAACAAGAATGTGAATCAACTTAGATTCTTG
TGTAGCATCTAGTGGGGTCCCAATGAG
Conservation Information
Conserved circRNAs osa_circ_024934*
PMCS
Functional Information
Coding potential Y
Potential coding position 27429513-27429379(-)
27429976-27429434(+)
Potential amino acid sequence MDNSESLKEILAATNNFELCVAKKLYLMNEGAVGSLLSKYLKPYMLIGTPLDATQESKLIHILV
VRSIQAAYKHALISSDCQSKAEFKHPLIILANELKLVAEKECTIFSPTLCKRYPEAGRVALVLL
HLLYGQQLELFLERMDNSESLKEILAATNNFELCVAKKLYLMNEGAVGSLLSKYLKPYMLIGTP
LDATQESKLIHILVVRSIQAAYKHALISSDCQSKAEFKHPLIILANELKLVAEKECTIFSPTLC
KRYPEAGRVALVLLHLLYGQQLELFLERMDNSESLKEILAATNNFELCVAKKLYLMNEGAVGSL
LSKYLKPYMLIGTPLDATQESKLIHILVVRSIQAAYKHALISSDCQSKAEFKHPLIILANELKL
VAEKECTIFSPTLCKRYPEAGRVALVLLHLLYGQQLELFLERMDNSESLKEILAATNNFELCVA
KKLYLMNEGAVGSLLSKYLKPYM(-)
MSMYGFKYLDSKEPTAPSFIK*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021