Detail information of BGIOSGA014529_circ_g.15


General Information
CircRNA Name BGIOSGA014529_circ_g.15
ID in PlantcircBase osi_circ_014687
Alias Chr04:29197927_29198893(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27433642-27434608  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014529
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014529_circ_g.1 BGIOSGA014529_circ_g.2 BGIOSGA014529_circ_g.3 BGIOSGA014529_circ_g.4 BGIOSGA014529_circ_g.5 BGIOSGA014529_circ_g.6 BGIOSGA014529_circ_g.7 BGIOSGA014529_circ_g.8 BGIOSGA014529_circ_g.9 BGIOSGA014529_circ_g.10 BGIOSGA014529_circ_g.11 BGIOSGA014529_circ_g.12 BGIOSGA014529_circ_g.13 BGIOSGA014529_circ_g.14
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TG
Number of exons covered BGIOSGA014529-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAATCGGCCAACAGAAAGATTCCTATGAAAATTACCTGACAAATAGTGAGGCAAGAAGGACCT
CATAAGCTGTTTCTCTTATATCGTCATCTGACAATTcctctgtatctcttatcttagagagaac
tatccgcaatgtttcactcataccatactcacgcgatcctgggaagagaagtaattcttcgaga
acatttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTGTATCTCTTATCTTAGAGAGAACTATCCGCAATGTTTCACTCATACCATACTCACGCGA
TCCTGGGAAGAGAAGTAATTCTTCGAGAACATTTGCCTGGATATCAAAATTATAAACAATAATT
AGGACAAACTCCCATGCTATAGGCACGAATAAATAAACTTGCTTGCCTGTCTTCTCTGCCACTG
CACTCGCAGTCTTTCTGTAGGGAAATCAGATTTCCCAACAGAACTTAAGAGCTGTAATGATATG
CAAGGCACATCAAGTTGCCCTTGCACGATCCTCAAACTGATATGTCTTAAAGCTCGCCTTGTCA
ATGTATCCATAGATTCAGAGATCTGGGGAAAAAAAAGCATTTTGATATAGTGAGTTTGCTCCAC
AGTTAACAGTATTCACTTGCCTTGTAATCAGGACAAACAAAAAAAAAAGGCTCCAAATGATTAA
CGAACAACAAAAATATGAAAAATAATCTAGTTGAAACAATAAGAGAGTACAACTCGTGCGTTGA
CATTTGGCAGGCATGTGAACATAAATACTTTGCTATCATTGTCACAGATAAAAATAAGAATATA
GAATGAAACTTTTTTTTGTTAAACTAGTGAAAAATAAACAGTACAGAACTTGGTGAAAGAGACC
TTGCCTCCATTTGTACACGGATCAAATCAAGAAGTTGGGAATAATGATTTTCTGGCTGAGGAGA
TGGATTTGATACTTCTGTTTTAGACCTTAGACCTTTTAAGAATTTAGGCTTCTTTTCTTTCTTC
TCTTCGGAGAACAGTATTTTTCCGCTGTTGGTTACACATCATTAAAGAAGCTGAGTTTAAACAA
CAATATATAACGCAATTTTGACACCACTTACATATAAAATCGGCCAACAGAAAGATTCCTATGA
AAATTACCTGACAAATAGTGAGGCAAGAAGGACCTCATAAGCTGTTTCTCTTATATCGTCATCT
GACAATT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021