Detail information of BGIOSGA014529_circ_g.12


General Information
CircRNA Name BGIOSGA014529_circ_g.12
ID in PlantcircBase osi_circ_005675
Alias 4:27431327|27435071
Organism Oryza sativa ssp. indica
Position chr4: 27431327-27435071  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014529
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014529_circ_g.1 BGIOSGA014529_circ_g.2 BGIOSGA014529_circ_g.3 BGIOSGA014529_circ_g.4 BGIOSGA014529_circ_g.5 BGIOSGA014529_circ_g.6 BGIOSGA014529_circ_g.7 BGIOSGA014529_circ_g.8 BGIOSGA014529_circ_g.9 BGIOSGA014529_circ_g.10 BGIOSGA014529_circ_g.11 BGIOSGA014529_circ_g.13 BGIOSGA014529_circ_g.14 BGIOSGA014529_circ_g.15
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014529-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCTTGAGGGACAATGTCAGGTGCTGCTTTGTTTGGAGGGGAACCAGAGCGTTCTGGCCTTGA
AAGAAGAAAATATGAATTCACTGATGGAGAGCCCATcatggctttttcatcatcatcatcatca
tcatcagtgcggcttgtttctgaaataactaccaagtttagcatgccctcaaagattgagttgt
caacctgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGGCTTTTTCATCATCATCATCATCATCATCAGTGCGGCTTGTTTCTGAAATAACTACCAAG
TTTAGCATGCCCTCAAAGATTGAGTTGTCAACCTGTTACAGAAGTCAAGTCAAAGAAACTTATG
TGAAAAGCTTTATGGTAGAATTTAACTTTTTTGCAAAAAAAAATAAAAATATTGCAAATTGATC
CTAATAAAATAATTTGCACCGTTAATTCAATCAAGAACAATCATGGGTCTTTTTCCAGTTCACA
ATAAATTTCCCCTTCATGCTTTCTTGGTTATGCAGACTGCATACTAGTCATACTAGTTATACAC
GTATGTCACATATCACTTTATGTATTTATACAGTTGACGATTAACCTTTTTCAGTTCATGACTT
GTATGGGCACAGCAGGTCGCTAACATAGTCAGGTCATAAGACAAATAATGAAGGATATTCTACC
TACATCAAAAACTGTCTTGCAAGTTCTGCACATATGCCTTATACCTTTGCATAACCAAAAAAAG
AAAAAAAGAAACCGATGACCAATGGCTCTAATTCGATGAATCATACTTGTATTGCATGTTTGAT
CAGTGATAAAGCTTGTAATCTGAACATGGATATAACTTCTTTTAGAGTGGAATGAATATTGATT
CAATCATAAGACAGCCCTGGGTCAACAAGCACCTCTTGGAAATTTTGAGGACCTGGCAAGAGTG
ATCAAATGACTGATCATCTTTCATGTGGTACCCAACAATGACTTAATGCCACAAGCTTAAGCAG
TTTGCATGGCTGATTAGGTAATGTACTAGAAGACTAACCACTAATTAACATCATGTGACCATGG
CCCTCATATTACTGGCAGCAAGTGAGGTTTAATATTCATTAATAGCTTTTTCAATAAGCAGCCA
GAGCACAAAAAGTGAGCCCTTGGTGGATGGAAAAGAAAAAAAAAACAGCTGAAAAAAAACTGTG
ATCCAAACAATGGAGGTGGCCAACCTTATTAAAGTATGAATGATAATTCTCCAATTGTCTAAAA
CACCACTTATTTATTTTAAGAATAGCACTGTCAACCAAACTTAGAGCCATGTTTCCGCCACAGG
CTTCCGCTGAACAAACAAAGCTGTTTGTATACAACTCTATTTCTTTAGCATCATTATGTAATCG
AAGCTTCTGTGTTTGAAGGCATGTGTGCTTAAGTAGAAGAATTTCCCCAGTTTCAGCAAACTGA
AAGAAGGAAAATAATCATAAGAGTTAGTGTGGTGGGTATTAGAACTGACAAAATGCTCAGAGAT
CAAAATTGGCACTTTGAATGAAAGAAGGAAACTTTTCCTCTAAGATAAGACACGGACTAAGCAG
AGTAAAGGCGATTTAATTTATCATTGTTCAGAAGATAATTAATTGAACGACAACAAACTGTAAC
TCTTTTTCTTCTGAATAGAAAGACCCTGTCAAACAATGTGCTATTGGTATCAAACATGTTGGCA
CATTATCGGATTGCATATCAGCAGTACCACTTGTTCATATAAACAAATCTAGGCACTTCAGCAA
CAAAGGAAATGTAGAGGACTTGATAGGAAGTCTATCTATTCACAATGTGCTCATTCTGAATTCT
AAAAGGTAAAATCATAAAACAGATAAAACACCCCAATTAAAGAAGAAAAGGATGATATATAGCA
GTAAACAGACCTTCTTGAAAAGCACCCAAGCAAAGAGTGTGTCATGCAATTTCTGGGTGATACC
CAATATAGTCCAGGTCAGCTTTACTGTTTCCAGTATTTCATCAGCCTCCTGGATGTAAAATCAA
ATAACAATATCAGCAACTCAGGATAAAACCGTTGACTTACTGTCACAAGGCAGTCCAAGAATGT
TTCAGATTTAGTCATTTACTTATTCAACAAAACCTAGACATTTTCATTTTTAAGCTGACCAACA
AGGAAATAATGATGTATAGAGAGTAAAGAAGAGCAAACCTCCACAAGCTGCCCATCTTCGAGAA
TATCGAACACGATGCAAAGTAATTTCTCATATAGTCTAAAGTTGAGATGATAGCTCTGGATCCA
ATGATAGGTCTCGCCTTTAAGGTTGAATTTCTTTGGGGCTTCACATAATTTTGCGTTGTATCTT
TCAATGATAGTCAATACCTCAACAGGCCCATCAGGGACACTAACTACCCAATCCTGGAATGATT
GCCGGCATAAATATAGAAAGAGCTCAGTATTAGTATTAAACCTAATTTGGAAAGAGATCAAACT
TGATGTGGCTTCCGAAACACAAGTAAAATTACTTAACCAATAAGAAAAGATAAGAAACACGAAG
ATTAGCTCTTGCCTCTGTATCTCTTATCTTAGAGAGAACTATCCGCAATGTTTCACTCATACCA
TACTCACGCGATCCTGGGAAGAGAAGTAATTCTTCGAGAACATTTGCCTGGATATCAAAATTAT
AAACAATAATTAGGACAAACTCCCATGCTATAGGCACGAATAAATAAACTTGCTTGCCTGTCTT
CTCTGCCACTGCACTCGCAGTCTTTCTGTAGGGAAATCAGATTTCCCAACAGAACTTAAGAGCT
GTAATGATATGCAAGGCACATCAAGTTGCCCTTGCACGATCCTCAAACTGATATGTCTTAAAGC
TCGCCTTGTCAATGTATCCATAGATTCAGAGATCTGGGGAAAAAAAAGCATTTTGATATAGTGA
GTTTGCTCCACAGTTAACAGTATTCACTTGCCTTGTAATCAGGACAAACAAAAAAAAAAGGCTC
CAAATGATTAACGAACAACAAAAATATGAAAAATAATCTAGTTGAAACAATAAGAGAGTACAAC
TCGTGCGTTGACATTTGGCAGGCATGTGAACATAAATACTTTGCTATCATTGTCACAGATAAAA
ATAAGAATATAGAATGAAACTTTTTTTTGTTAAACTAGTGAAAAATAAACAGTACAGAACTTGG
TGAAAGAGACCTTGCCTCCATTTGTACACGGATCAAATCAAGAAGTTGGGAATAATGATTTTCT
GGCTGAGGAGATGGATTTGATACTTCTGTTTTAGACCTTAGACCTTTTAAGAATTTAGGCTTCT
TTTCTTTCTTCTCTTCGGAGAACAGTATTTTTCCGCTGTTGGTTACACATCATTAAAGAAGCTG
AGTTTAAACAACAATATATAACGCAATTTTGACACCACTTACATATAAAATCGGCCAACAGAAA
GATTCCTATGAAAATTACCTGACAAATAGTGAGGCAAGAAGGACCTCATAAGCTGTTTCTCTTA
TATCGTCATCTGACAATTCTTAAAAAGTGAAAAGAAGTTTACAATAAGTTCAAGAAAACAAATT
AGGTAATCCGCAGTTGATCTTACTAAACAAGATTAGAGAAAATGATAATGATTACAGGGACATT
ATATCTGACAAAGATTCAGTGGAGCTGTATCGAAAAAATATATATAAGAGCACAACAAAATGAA
GCATGCACAATTTTATACCTGTGCTTAATTTAGGTAGACCTAGTGAAAGAATATCCATTTTATT
TACTTGCTTGGGATATATATCTGCCAGACTAACATCCTTAGTACCATTATCTGTTCCCAAAATG
TTAATAGCTGCTCTAAAAAAATCAACATGTTCTCTAATTGGAGTTGGGTTCTCTTCAGCAGGTG
CTTGAGGGACAATGTCAGGTGCTGCTTTGTTTGGAGGGGAACCAGAGCGTTCTGGCCTTGAAAG
AAGAAAATATGAATTCACTGATGGAGAGCCCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 27435073-27431329(-)
27434987-27432326(+)
27435048-27431379(+)
Potential amino acid sequence MGSPSVNSYFLLSRPERSGSPPNKAAPDIVPQAPAEENPTPIREHVDFFRAAINILGTDNGTKD
VSLADIYPKQVNKMDILSLGLPKLSTELSDDDIRETAYEVLLASLFVSGKILFSEEKKEKKPKF
LKGLRSKTEVSNPSPQPENHYSQLLDLIRVQMEARQMFSKNYFSSQDRDWVVSVPDGPVEVLTI
IERYNAKLCEAPKKFNLKGETYHWIQSYHLNFRLYEKLLCIVFDILEDGQLVEEADEILETVKL
TWTILGITQKLHDTLFAWVLFKKFAETGEILLLKHTCLQTQKLRLHNDAKEIELYTNSFVCSAE
ACGGNMALSLVDSAILKINKWCFRQLENYHSYFNKVDNSIFEGMLNLVVISETSRTDDDDDDDE
KAMMGSPSVNSYFLLSRPERSGSPPNKAAPDIVPQAPAEENPTPIREHVDFFRAAINILGTDNG
TKDVSLADIYPKQVNKMDILSLGLPKLSTELSDDDIRETAYEVLLASLFVSGKILFSEEKKEKK
PKFLKGLRSKTEVSNPSPQPENHYSQLLDLIRVQMEARQMFSKNYFSSQDRDWVVSVPDGPVEV
LTIIERYNAKLCEAPKKFNLKGETYHWIQSYHLNFRLYEKLLCIVFDILEDGQLVEEADEILET
VKLTWTILGITQKLHDTLFAWVLFKKFAETGEILLLKHTCLQTQKLRLHNDAKEIELYTNSFVC
SAEACGGNMALSLVDSAILKINKWCFRQLENYHSYFNKVDNSIFEGMLNLVVISETSRTDDDDD
DDEKAMMGSPSVNSYFLLSRPERSGSPPNKAAPDIVPQAPAEENPTPIREHVDFFRAAINILGT
DNGTKDVSLADIYPKQVNKMDILSLGLPKLSTELSDDDIRETAYEVLLASLFVSGKILFSEEKK
EKKPKFLKGLRSKTEVSNPSPQPENHYSQLLDLIRVQMEARQMFSKNYFSSQDRDWVVSVPDGP
VEVLTIIERYNAKLCEAPKKFNLKGETYHWIQSYHLNFRLYEKLLCIVFDILEDGQLVEEADEI
LETVKLTWTILGITQKLHDTLFAWVLFKKFAETGEILLLKHTCLQTQKLRLHNDAKEIELYTNS
FVCSAEACGGNMALSLVDSAILKINKWCFRQLENYHSYFNKVDNSIFEGMLNLVVISETSRTDD
DDDDDEKAMMGSPSVNSYFLLSRPERSGSPPNKAAPDIVPQAPAEENPTPIREHVDFFRAAINI
LGTDNGTKDVSLADIYPKQVNKMDILSLGLPKLSTELSDDDIRETAYEVLLASLFVSGKILFSE
EKKEKKPKFLKGLRSKTEVSNPSPQPENHYSQLLDLIRVQMEARQMFSKNYFSSQDRDWVVSVP
DGPVEVLTIIERYNAKLCEAPKKFNLKGETYHWIQSYHLNFRLYEKLLCIVFDILEDGQLVEEA
DEILETVKLTWTILGITQKLHDTLFAWVLFKKFAETGEILLLKHTCLQTQKLRLHNDAKEIELY
TNSFVCSAEACGGNMALSLVDSAILKINKWCFRQLENYHSYFNKVDNSIFEGMLNLVVISETSR
TDDDDDDDEKAM(-)
MSGAALFGGEPERSGLERRKYEFTDGEPIMAFSSSSSSSSVRLVSEITTKFSMPSKIELSTLLK
YE*(+)
MNSLMESPSWLFHHHHHHHQCGLFLK*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021