Detail information of BGIOSGA015140_circ_g.1


General Information
CircRNA Name BGIOSGA015140_circ_g.1
ID in PlantcircBase osi_circ_014330
Alias Chr04:20789654_20793216(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18023231-18026794  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015140-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCCTGGATTGCCATTATCTGTACAGCATTGTACCCAAGCTTTTTAATTCTTGGTAGCACCTC
ATCCCTAAAATTAGCATATGTGTTTATCTTCGGTTCctccatatttttcctcaagatgctgcat
ggcctgatcaaactcttgcataccatgatatctaagataatctgcatctccctgaccaatgaag
gataaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCATATTTTTCCTCAAGATGCTGCATGGCCTGATCAAACTCTTGCATACCATGATATCTAAG
ATAATCTGCATCTCCCTGACCAATGAAGGATAAAATTATTAGTTTATCACTTTATTGATAAATG
ACGGCAACTTGCATTAGTCTAAAGCTTTCACCAACAGTAAAGCAGCTGTGATCTTTACCCAACG
ACATTGTATGTACTAAGCATATATATGATCAAATCTGGATCATAGAAGAGGATAAAATAGTGCA
GGTAAAACTTACAAGGTCAAATCTACGACGGCATTTATCAAAACTGTAGTTGTTTCCTGGGAGG
ACCGAGCCATTTGGAAGACTTTGCGGGCCTCTTGGGAAATCTATCCATTCTGCAAAGTAAAATA
GAAGCAATCATTATATCCTCTGTATATGCAATAGATTACATGAGATGCAAAGGTCATGGCTAAA
ACCACTTCAAATAAAAATAGTACAAAATGCAAGAAGATATAAATACTAACCAGGATGCCCAAAC
TCATTTCCCATGAAATTAAGATAGCCTTCGCCTCCTAAGCCCATGGTGACAAGCCTAATCATTT
TATGTAATGCTATCCCACGATCAATGCGAGGTGTTGAAGGTCTGTCTAGAGCCATAAAATCATA
CATATCCTGCATGAAAGGAAGTTGAGATATCCCTGTCACACTGTTTGATCAACAAATTACAGCA
CAGTAGTGAACTTTGGTATGTTCCAAGTCTCAACAATCCCAAAAGAGAATTGCATAGTACCCAA
AAGAAATAAATGTTATAATGAAATGCAACATAAGACTAGGAGTGTATCCCATCTTGATCTTGGC
AAGGTTAGGACTTTGAGAAAATTTCCTAGAGCACTTAACCCAAAAGGAGCCCAAATAAATAGTA
AAAAAGAGACTAATCCTTGGGAGTTGGGACACTGTAACTCTTCTAGCACATGGTTTTCATTGCA
GAAAGTAGCATATGTTTACACATGAAAAGACTCAGAAATTCAATGAAATAGTTCATTAGTCAGC
AAAATTTTATTCTTGCTAAATATTTGCTTGAGAAAACACATACGGTCGATTGTGAACCTACAAA
TGATTACCTAAGGAATGAACAAATGGGTAAATACAGAGAACTCATTAAATTGGTCAAACCTAAG
GTTTCAAGCTCTAATGTAAGTTAGCAAATTACCACACATTAAATTTTTTTCAGCAATATTTCGT
GTCAAATAGACGTTGGGTGCTAGTGAAGCAATAAATCATTGTACCAACAGAAGACAACCAATAT
GATGAAACAAAGTCAATTATTCAATTCTTTTTAGGTACGAAATTAACAGATAGTACCTTATCCA
TCAACCAGAATGCAATAGTCTTGTCACCAACTAGTGCTTGGTCATGACTTTCTGCATAAGTAAC
ACACTTCTCTGACCACCTTCTATTCGTTAGGGTGTGCACGATATCACCCATTTTCCAATATTCG
TCACTTTGCCTGCATTAAAGAAAGTTGGAATTTCATGACAACATATTTGGAAGTTGGAACCTAC
CCAGAACATACATTAATACTAGCTCTCAGTAACTCATAAAAAATATGATTAAAAAGTGTAAAAG
CAGCTCTTCAAAGGGCATAGCAGCAGTACCAAGATGGAGCACTAGACCACTAACATGGCACTAT
AAAAAGGAGAGCATAACTCAATGATATCCAGTAAGTTAGTTGAATGTCTCAATTTTCAGATGTA
CAATCACCGAAGTTCCAGTACTTACTTGAGGAGTTCGATCCATTTGTCCGGTACAGCCATATGC
AAACGATAGTCAAAACCAACACCACCATCTTGAACAGGAATACAAAATGTGGGCATCCCGCTGA
CCTGAACAGAAAGCAGGGATGTAAGTTCAACCATGTTGCTCTCACAAATAGTTTATAGCATAAT
TAAATATATATTTGGTATCATATGCTAGCCCCATTTTGCATTGTGCAACTTAAATAAATCAAAT
TACATTTTCTCATTTAATGAAGAATAGAAAAGAATGCTGTTGAGAAACTATAACCATCAAGGAA
CATGCCTGTTAGTTCTTCCAATGCCCTTAAACTTTATCAATTGGGGACAAATATATTATATTTT
ATATCTGGTTGGGAATAGATACTAACCGCTTTCACCCAACTAAAACTAATTAATTGGTTTGTGT
GAAGTATCAATATGACAGAAAAGCAGATACCATAAGCACTTACATCTTCACCAATGGCTACAGC
CTCAGGATAAAGCCCATGAATTAGATCGTTCACCAGCATCAAGTAAACTACTGCATCAACATCA
GTAGCAAATCCAAAATATTCGCCATAGTTGCCAGTAAATGCCACCTATAACAAAACTTGACAAT
TTTAGAAAAAACAGTAGCAATTCCCATCAGGGGCAAACAATACTAGAATGAAATCCAAGTATCA
GCAGCAGGAGTCATAATAAATCCATTCAAACATAGCAATGGTTTCTGCAAAAGGACATTAAGGC
ACGCCCAAAACAGAAATGGCAGCACTCTGAAATGCAATTTACCAGAAACACTTGATAACTTACC
TGTAAACCATGATGAGTATACATCATGGAGGTCACCCCATCAAATCGAAACCCATCAAACTTGT
ATTCTTCAAGCCACCACCTTGCATTCGACAGTAAATATCTTAAAACCTGCAAGAGGACATAATG
TATGCATTGGTAAGGACAGAGTAACGGCAATAGTGAACCAATCTATGGTGACAATAGTCAACTG
TTACATACTTCCCAACTCCCATAGTTGAACAGGCGAGAATCCCACATCCAGTGATGACCCCGTG
GTCCACCATGGAAGTAATGTGTATCAGTACCATCAAAACCATTCAAACCATCCAGGGTATTGTT
TGATGCATGACTGCAGGATACAACCAAAAAGAAAGAAAGAAATGGTAAAACTATCCAACTGAAA
AGGATCAACTAAATCAAGTGGATGGAAAAGAAGTAAAAAAAATTATCTGGTCTATAAACACATG
AATAAAGGGGTTAAGTCCAAGTACAATAGGTTCCGAACTCTTCAGTCAAGATATTGACATGTAT
ATACATGGAACTCTTTATGGAATAAACAGTGTCATGGGTGGACGCCAGTAATCTAAAATACTAG
ATTTACACAGACAAACAAATCAACATTTCACTAATTACCTGTGAACAATATCCATAAGTACAAG
CAAACCAAGCTCGTGAGCTTTATCAATCAGAGATTTCAAGTCTTCTGGGGTTCCGAAACGGCTA
CTTGGCGCAAAGAAGTTAGTAACATGATACCTGTAAAAAGAATATAACAAAGATCAAACCAGGT
CAGAAACAGAAAGAATAGTTGCACTATTGGTGTCCACACAAAGAAATTTGTTCAGAAATTTCTG
CATGTTCAGAACACTAAAATTTAAGAACTCTAAATGGATCTTGTGAGTACCCAAAGCTTGCGTA
ATAAGAGTGCTCCTGGATTGCCATTATCTGTACAGCATTGTACCCAAGCTTTTTAATTCTTGGT
AGCACCTCATCCCTAAAATTAGCATATGTGTTTATCTTCGGTTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021