Detail information of Zm00001d022502_circ_g.13


General Information
CircRNA Name Zm00001d022502_circ_g.13
ID in PlantcircBase zma_circ_002644
Alias circ1653
Organism Zea mays
Position chr7: 179027393-179031536  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d022502
Parent gene annotation Exocyst complex component SEC8
Parent gene strand +
Alternative splicing Zm00001d022502_circ_g.1 Zm00001d022502_circ_g.2 Zm00001d022502_circ_g.3 Zm00001d022502_circ_g.4 Zm00001d022502_circ_g.5 Zm00001d022502_circ_g.6 Zm00001d022502_circ_g.7 Zm00001d022502_circ_g.8 Zm00001d022502_circ_g.9 Zm00001d022502_circ_g.10 Zm00001d022502_circ_g.11 Zm00001d022502_circ_g.12 Zm00001d022502_circ_g.14 Zm00001d022502_circ_g.15 Zm00001d022502_circ_g.16
Support reads 11
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d022502_T007:4
Zm00001d022502_T010:4
Zm00001d022502_T006:4
Zm00001d022502_T004:4
Zm00001d022502_T011:4
Zm00001d022502_T013:4
Zm00001d022502_T002:4
Zm00001d022502_T005:4
Zm00001d022502_T016:4
Zm00001d022502_T008:4
Zm00001d022502_T018:4
Zm00001d022502_T003:4
Zm00001d022502_T019:4
Zm00001d022502_T014:3
Zm00001d022502_T009:4
Zm00001d022502_T012:4
Zm00001d022502_T001:4
Zm00001d022502_T015:4
Zm00001d022502_T017:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTGTCTGTGCAGGAAAACTTGATCCATGACGACCAGAAACTGATATTGTTGGCTTCTCTTAG
TGACTCATTGGAATATTTAGCAGATTCAGTTGAAAGggtccagcagcatttagaccacgtgtac
atgcaacatcagcatatagttcatcggtggaacttggacgccctgtgcttcaagggcttctcgc
cattgata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCCAGCAGCATTTAGACCACGTGTACATGCAACATCAGCATATAGTTCATCGGTGGAACTTG
GACGCCCTGTGCTTCAAGGGCTTCTCGCCATTGATATAATAGCCAAAGAGGTAGTTTCCCCGCC
CACCCGCCCAAAAAATCTTGTCTATTCCTTCTAATTTTGATTTTATTTATCTGTTGAAATTTCT
TCCTTCTTCCTAGGTTCTTGGATGGGTTCAATTGATGCCAAACTATGCGACTGAGCTTGTGGAG
TATGTACGCACATTTTTAGAACGTGCTCATGAGAGATGTCGTGCATCATATATGGAGGTATTTG
ATACACTTTGTTTGAGATATGTATAGACATGTATATCTTTGTACTCACCTTATTTGTACACCAA
GCCATACAACCTATATAAATATATAATGGAAGGTGAACCCCCACACAATGGGTGTGTGGTATTT
TCCTAATTCTTTACATGGTATCACGAATCCGGCCCTAACCCTGGATCCTCTCCTCTGTAGCCCC
AACCCCTAGCCGTCGGCCCTTACCCTAGGGCTTCGTCGACTCCCTCCCCTCTCTGTTCGTTGGA
CAAACCCTAGGGTGCCAGGCTGCCAGCGGCCTCTCCCTCCACCCTGCTACATCTCTTGTCGAAG
CCGCTAGTCTTCTCTCATGGGTACTAATAGTCGCTGCTTCTCCTCATGGTCGCCCTTGGTCTGA
TGGTGTCACCAAACTCTCGCGGCTACAGCGGCGGGTAGCCCCCTACGCATGGGCAGGTCTGCCC
CAACGACCCTTGGTTTTGCTTCAACCCCGGTCCCCCCAACCTGGCACCGGTGGCGGCAGAAGAT
GGCGTCCTCCCACAATCGACCTTCTTGGGGTAGGTTCTCATGCCAACACCAACTTCGCTCCACT
TTAGGTGCCCCAACCGTTCCAGGCGGGGGATCAGGCAGGGCTGGTTGCTCAATTAGCTCTCTGT
AGAACCCTGGGTCATGGGTGATGGGCTCTGGTGCCTCCAGCCATATGACGTCTGATGATGGTAT
ACTTCTCTCTTGCCATCTCCCCTCTCATCTTTCCATCACAGTTGAGCAGCCAACCTCAGAGGAG
GAGGTGTGGAATACCATCAAACAGCTTCCTCCGGACAAAGCCCCGGGGCCTGATGGGTTCACAG
GTCGTTTCTATAAGGCCTGCTGGTCAATCATCAAAAAAGACATTATGGCTGCTATCCTGGCTGT
CTGGAACAAGGACTTCCGGAATTTCAGATACCTCAACACAGCCTTCATCACTCTTTTACCTAAG
ACAGCATACCAACGTTTCTTGGCTGGTTCTGTGGATTTTGAGCCGGGTGAAAGGATATGGAAGA
GTTGGGCGCCCCCTGAGTGCAAATTCTTCATCTGGCTTGCTTCTCTTAATAGGTGCTGGACGGC
GGATCGTCTAGCACGTAGAGGTCTTGACCACCCGGGGAAATGCGTTCTTTGCGATCAGCAGCAG
GAGACAATTCAACACATCTTGATTTCATGTGTCTTCTCCAGGAATATATGGTGGCAGATCTTAA
GTAGAGTGGGGCTGCAGCTTGTGTCACCAGGGCTGGAGGTATCTATGTTCCAAGATTGGAGTGT
GGCTGAAGGTCTTGTGCCAGTTTTGCACAGAAATGGGTTCAACACATTGGTTATTCTTGTGGCT
TGGTGGATCTAGAAGCACAGAAATGCTTGTGTTTTTTATGGTGTTTCTCCAAACACGAGTTCAG
TTCTACAGCATATCCATGAGGATGCCAGGCTTTGGGAATTGGCAGGTGCTAAGGCCCTGAGAAG
GTTGTGGCCTTGATTTGGGGATGTCTTAGTTGTTTCCCTAGGAGTGGTGGTAGTTTCTGTTTGT
GGGGTTGCTCTATTTTCAAGGCTCCTAAAGCCTCTTTCCTTTTTTGTATAGTCCTTTGTTTCGT
TTGTTTTGGTTTTTTCCCTACTTTCTTTGGGTATTTGTCACCTTGTACGTGGTCTTCTTTATAC
CTTTTCTCTCTACTTAATATAATGATGCGCAGTTCTCCTGCGTGTTCGATAAAAAAACAATTTG
TGCTGAGTGCTGACAGATGCTCGTTCCTTGTTAGCTAATTCCGGCCGCCACTTCCTCCTAGCTA
GCCTTACCTGCAACCAGCTACTAGTAAACAGAAGCTACTAGCTAGCCTAAGGATTGTTTATCTA
TGCACTGAATGCTAGGACGACGACTCGACGAGTTGATCATTGTCCTATTGTGGTTTGCTGCATG
CATGCAAGCCCATGGCCCTGCTGGCCGGCCAGCCGGCGGCCGAGTGGTGATGTGGAGATGGGCG
GCGCGAGTGGCATGGAGGGAGGCAATGTGATGGGCGGCAGATGCGCAGAGCACATGTGATGGCG
GCGCGCCTAGCTGCTCAGGTTTTGTGCGTAATGGGCTACTGGCGTTCGGGTGGGCTCAACTCTC
GGCTCATCGGCCGGACCTCAAATGAGTTATTGCACTGTGGCGAGTTGTTCCCGAATTGCCAAAT
GCGGAACAAAAAACGGGATCATCCCGATTTAAAACGGGATCCCGGTTAAACGGTCAGGAAAACA
GCTCTACCGTTTTAGTTTTCGATTACCATTTTTGCATCCTGATTTCGTTTTTTAAAATCGGGTT
CGAAAACAATCGGGACAAAATTAACAAAATCAGTTATACGATAACGGTCTGTTCAGGATTTTCC
CATCCTACTTTCATCCCTAGATATATTATGCAATCGTACTGCCATGTACCTTTGTAAAACAATG
ACACAGCTCTCCTGCCTGTTTGAGGAAAACAAAGTGATACATTATGCCAGCTGAGCTAGCAGAC
TCTGCCTTGGGTTGGGATATTTCAACTCTGTCAGTTCCGCTTCCGATATTTTTGATAGTTCTAT
TTCTGGAATTATATTTTTATTCCAGTTTTGAGAAGAAAAAAAGAGTCTGAAAGTGGTTTAAGGC
ACAGATGGACTCCAATTGTTATCACCCTTACCCATAAGTACACTGTTTTCTTGTGTCTCTTGCA
AGTTTTTGATTCTTGTATTATATGTGAAAATTGTAGGCTGTCCTTGAAAAGCAAAGTTATATTC
TCCTTTCAAGGAATGACATTGAGAGTTTAATGCGCCTGGAACCAGCAAACATTTCTTTGCAAAA
TTCTACTGGTGAACATGATAACAATGCAACAGGTGCAGAGGCAGTCGAAGTAGAGATTGAACTA
AGTGATCTCTTATTAGATATGTGCCCAATAAAACAGGTATTTTTTTATTATTTACAAATTTGTG
AATACTTTTATTTGTGTTGGTAAGTTCTATTCCTATATTTGTTTTATTTTGAATTTGTATGATA
TTTCATTTGAATCAATGACCAACCATGTTGTCGTTCTTCAAGATATACTGGACATTTGATAATT
GGTTCAGCTGTTTCTTTTGTCACAATTTCTTGATTGTGTCTGCAAAATGTAATAATGTAATTTA
AAGATCTGGTTTGTATATGTTACAGCCAAATATAGAATCAATATGAGCCTGTTTTGTTTTAGCT
TGGCTCAAGTGGCGTACTGCCTTCAATTTGTTTTTTCTCACTAGGATTTTAAAGAAATCGAAGC
AGCGCAATGGCTGTGTATTTGACAATAAGAGCCCCAGTATTGCTGATGCTATTAGAAGAGTTGG
GTTGGAGGTTGACCTTTGGGAGATGGCTGGTGCAAAGAAGTTGTCTTTGCTCACCGCCCCCATT
CCGGGCCTCCCTGCTAGTTAGCTAGCATTGTGGTAGTTCTTATTAGTTTTTTAGTCATGGATGA
GTTTTTGTATGCCTGTTATTGGCCGCCGTAGGGGCCTCCAGTTTGTTCTTGTATCTGACCCTCT
TCTTTAATATATTATCGCGCAGTTCTCCTGCACTTTCAAGATTTTTTTTTAAAGAAATCGATAC
AACACCCAAATAGAAAAATAAGGTCAATAACTGTACAGACTGGAAAATGACATGCAGTTTAATG
CCTTACAGCGACAATCTGATGTTAGTTATCAATTTGTAAGACATTCTGTGTTGCTGCTTGTAAC
TTCTGTGCGTGTGCTTGTCTGTGCAGGAAAACTTGATCCATGACGACCAGAAACTGATATTGTT
GGCTTCTCTTAGTGACTCATTGGAATATTTAGCAGATTCAGTTGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.010339975
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b