Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d022502_circ_g.13 |
| ID in PlantcircBase | zma_circ_002644 |
| Alias | circ1653 |
| Organism | Zea mays |
| Position | chr7: 179027393-179031536 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRCexplor2 |
| Parent gene | Zm00001d022502 |
| Parent gene annotation |
Exocyst complex component SEC8 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d022502_circ_g.1 Zm00001d022502_circ_g.2 Zm00001d022502_circ_g.3 Zm00001d022502_circ_g.4 Zm00001d022502_circ_g.5 Zm00001d022502_circ_g.6 Zm00001d022502_circ_g.7 Zm00001d022502_circ_g.8 Zm00001d022502_circ_g.9 Zm00001d022502_circ_g.10 Zm00001d022502_circ_g.11 Zm00001d022502_circ_g.12 Zm00001d022502_circ_g.14 Zm00001d022502_circ_g.15 Zm00001d022502_circ_g.16 |
| Support reads | 11 |
| Tissues | seedling leaves |
| Exon boundary | No-Yes |
| Splicing signals | GT-TA |
| Number of exons covered | Zm00001d022502_T007:4 Zm00001d022502_T010:4 Zm00001d022502_T006:4 Zm00001d022502_T004:4 Zm00001d022502_T011:4 Zm00001d022502_T013:4 Zm00001d022502_T002:4 Zm00001d022502_T005:4 Zm00001d022502_T016:4 Zm00001d022502_T008:4 Zm00001d022502_T018:4 Zm00001d022502_T003:4 Zm00001d022502_T019:4 Zm00001d022502_T014:3 Zm00001d022502_T009:4 Zm00001d022502_T012:4 Zm00001d022502_T001:4 Zm00001d022502_T015:4 Zm00001d022502_T017:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.010339975 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chen et al., 2017b |