Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d022502_circ_g.5 |
ID in PlantcircBase | zma_circ_002648 |
Alias | circ1239 |
Organism | Zea mays |
Position | chr7: 179010717-179027705 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d022502 |
Parent gene annotation |
Exocyst complex component SEC8 |
Parent gene strand | + |
Alternative splicing | Zm00001d022502_circ_g.1 Zm00001d022502_circ_g.2 Zm00001d022502_circ_g.3 Zm00001d022502_circ_g.4 Zm00001d022502_circ_g.6 Zm00001d022502_circ_g.7 Zm00001d022502_circ_g.8 Zm00001d022502_circ_g.9 Zm00001d022502_circ_g.10 Zm00001d022502_circ_g.11 Zm00001d022502_circ_g.12 Zm00001d022502_circ_g.13 Zm00001d022502_circ_g.14 Zm00001d022502_circ_g.15 Zm00001d022502_circ_g.16 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-AA |
Number of exons covered | Zm00001d022502_T013:13 Zm00001d022502_T017:13 Zm00001d022502_T003:13 Zm00001d022502_T008:14 Zm00001d022502_T001:13 Zm00001d022502_T015:13 Zm00001d022502_T007:13 Zm00001d022502_T019:4 Zm00001d022502_T010:13 Zm00001d022502_T016:12 Zm00001d022502_T006:13 Zm00001d022502_T004:13 Zm00001d022502_T012:14 Zm00001d022502_T014:13 Zm00001d022502_T005:13 Zm00001d022502_T009:13 Zm00001d022502_T002:13 Zm00001d022502_T011:13 Zm00001d022502_T018:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.004834883 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |