Detail information of Zm00001d022502_circ_g.4


General Information
CircRNA Name Zm00001d022502_circ_g.4
ID in PlantcircBase zma_circ_002650
Alias circ1240
Organism Zea mays
Position chr7: 179010717-179015083  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI
Parent gene Zm00001d022502
Parent gene annotation Exocyst complex component SEC8
Parent gene strand +
Alternative splicing Zm00001d022502_circ_g.1 Zm00001d022502_circ_g.2 Zm00001d022502_circ_g.3 Zm00001d022502_circ_g.5 Zm00001d022502_circ_g.6 Zm00001d022502_circ_g.7 Zm00001d022502_circ_g.8 Zm00001d022502_circ_g.9 Zm00001d022502_circ_g.10 Zm00001d022502_circ_g.11 Zm00001d022502_circ_g.12 Zm00001d022502_circ_g.13 Zm00001d022502_circ_g.14 Zm00001d022502_circ_g.15 Zm00001d022502_circ_g.16
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered Zm00001d022502_T007:10
Zm00001d022502_T016:10
Zm00001d022502_T014:10
Zm00001d022502_T018:5
Zm00001d022502_T005:10
Zm00001d022502_T009:10
Zm00001d022502_T013:10
Zm00001d022502_T011:10
Zm00001d022502_T001:10
Zm00001d022502_T015:10
Zm00001d022502_T008:11
Zm00001d022502_T012:11
Zm00001d022502_T003:10
Zm00001d022502_T010:10
Zm00001d022502_T002:10
Zm00001d022502_T006:10
Zm00001d022502_T004:10
Zm00001d022502_T017:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGTCTCACACTACCATTATTATGTTGTTCATGGGGATTTTTTTTGCAGTTTATGAATAAAAT
AGGGTTGATGTTGCCTCAGAAGTACTCACAACTTGGggtaggtgctcttcaagatgttcgttct
gatctaacaaagctgcgaggagtactattttacaaaattttggaagagttacatgcccatttgt
acaacaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAGGTGCTCTTCAAGATGTTCGTTCTGATCTAACAAAGCTGCGAGGAGTACTATTTTACAAA
ATTTTGGAAGAGTTACATGCCCATTTGTACAACAATGGCGAATATAGGTATGCTTTTATTTCTT
CTCGCCTTCTTTGATGATATTAGATTCTCAGTTGTTTCTGTAGCCACTTCTTTTTTTATATTAC
ATTCTTTCTACAGCATATCACATATATTTACTTAAGTCTGTTGGCACTGGTGACTGATCTGATC
TGAAAATCTCATTTTGACGTGATTTCTTGGTAACACCTTTGGTGGTAAATAATATGTGTCATGC
AATTGACTTCTGTGATTCCATCATTGATCAACATTTGTTCACTTTCCAAGATTTTCTGTGCAGC
TCTGCAGTTTTAAGTATGGTTGACAGTGAGCAAGCACCGACTTCTACAGCTACTGGGCGATTGG
TAAACAGCATGCAACCTCTTTCAAGGAGAACTAGATCAATTAAAGGTGACAACCACATTGGTGG
GCCAGTAGATGGGTTTCCAAAAGTTAGTTCTGTTGATGGAGGGTATGTTCAACTTCCTACGCTT
TCTAGCATTTGATGCATATGCCTTTTGGTGACTTGATTCTGTGCCCAAGGGTCTGAATGCATTT
CACTCTGGTGACTTCCAGGCAAAACATTTGAAAGGTGATAAATGACAAAAAAAACTGCAATTTG
TCATGAATATTAGATATATAGATTATTGCATGATCTCCATGAATTATGTTAAGAATTTGTAGCA
TTTATATCATACTACTGTAATTCAGTAATTATGGTCCTTTCTTAAATGGATGGAATACATTAGC
AACTTGTGTGTCTGTTTTTTTCCAGCTCTTCGTTTGATGGCCCAGATGATAATAGCTTAGATAT
GAGTGAAAGTGATGGACACACTCGAAAGGATTCGAAAAGTTTTTCTCATGAAATCCCAATTTTT
CTTTCCTATGCTACACCAGATGAGTTTCTTGTATGTCTTTGTTTCTAAATCCATGGTGGTGTAA
TTGTTTCCTATCAAGTTTCCTCACTTATAATTATTTGTTTTGAATGCTTCTTTAGGAATCAATG
ATAAAGGCAGATGCTCCCCTTAATGTGAAGTACCTGAGAACATTGGTACAATGCTTATCCATGC
TTGGAAAGGTTGCAGCTGCAGGAGCTGTGATATGGTACTTCTCATCCTATCTGTTTTTCAATTT
TCTTACAGAAGAGTAAGTTCTGTGTGTTATCTTTTATGGGTTTAGATTTATTGGAGAGGGAAAG
GGAGAGGTCAGCTGCGGCTGAGGAAGGGCTGCAGTACTGTGCACAGTACTGCTGGCGCTACAGT
GTTTGTGATGAACACCAGCACGGAAGGGAGTGGGAAATCCATTCTATCGTCCTCTATTTATAGA
CTCAACTTGGCGCTCAAGCCACCCTATAGATGGGATTTTATAAACATAATCCTCTACTTCTTAA
CTTATCAAACCACTTGCCTAACAAATAGTTTATTGGAAATTGGAATACTCTTCTAGAAGGTTCT
GCATGGTCTAGCACAACCCATGGCTATCTGGGACTTAACATTGTCATGAACGGTTATCATAAAA
ATTTCTTCTAGAGAACTAGGCCATCCTTATTTATTACTTAATACATGGAAATATGTACAAATAT
CATTCTTATTAATTAGTACAGCTGTACTAGAACAAGCTCCCTAGTCCCTTCCATCCTGTCTAGA
TACAATTAGAACTACCTTATGGCGATAGTATTTTAACCCATGACAAAAACATGTTGTTTACTCA
TGTTAGAAAGATTTCTTTAGAACTCCATTTTGTGGTTTATAAGAAGATAATCTTGCATGTGCTA
TTTTGATTTTCACTTTAACTTTTGGGCTGTTTTTAACTAGTAGCATTTTCATGATAGCCAACGA
GTACGCCCTACAATCCATGATGTTATCACTTCAAAGATTAAAGCATGTTCTGAAGACGCTTCAA
AATCCAGTATGGGCAAAGCTGCAAAAACGAATGATGTGTTGCATTCAAATGGACCCACTCCCCG
GTTTCAAATGTTCACACAGAAAACAAAGAGTGGCGCATCTGTAATGGCAGCCCAACTAGTTGTC
AGTCCCATTTCGCCGACTATGGCACCCACTGGAGATGCTCAGCGTGCAGCTACTCAACTTCTTA
GATCAATATTTGAATGTCTTGTAGAGATACTTGGTAGGTGCTAATTATCAGTTAGTTTGGTTTC
ATACAAACCTGTATCTTATTGATTCACAAACATTAAAATTTATTTTACTTGTCAGAGAACCATA
TTATTGTTGGAGAGCTTCTTGAACAAAAATCAACATCTGAGGTTGATAATGTAAACACACCTCA
TATTGCAAATGGGGATGCAAGCTGGAATCCAGACTCTGAATCTTTCCAAGCTACTGGTGGTTTC
AGTGTTGCATTCTCTCTATCAGTCGTGCAGGTATCATTTTATACTACCTGCTTACCATGTTTAC
TGTGATATGATTTTTTAATATCCAATCCATACATTTTGTACCCTCTTAGTGGAATGACATGCAA
CTCTCTTGCATCGTCGGAGAAAAAAAATCACATGCATCCATTCATGTTTTTGAATTTGGTACAA
TATCATGCTTTTTTTATTTGGGAAGGTTTTATGTAATGAGCCTGTTAATCAGTAGTGTGGGTTT
TTGAATTCTTATGCCTTCCTTTCTTATCTGTGTTTCTTTTTGGTTAGAGTGAGTGCCAGCAACT
TCTGTGTGAAATTTTGCGGGCAACTCCAGAAGCTGCTACTGCTGACGCAGCTGTCCAGACAGCT
AGGCTTGCAAATAAGGATCCAGTGAAGGAAAAGAGGTAAGTATTCGCCTATGAGTGGCCTTCTA
CATGGATCACTATAATTTACTTGCATATTCACAATACTGTAATCAAGCTAATGTTATGTAATGT
CCTTAGCAATGAATGTCGATCTGTTTATATTATTATAACGTGCAGTTCACATGCAGCTGTTCTT
CCTTTTCATACCGAAGTGCTATTTTTAAGTTTAAATTTCATACCGAGGCGCTGTTTGAGGAATG
GGGAATTAGGGATAAGAGATGGGCTAGATGGGTTGGGGCGGCGCGGCGAAGTCACGACATCGCC
TGGGCGGACACCTAGGCGCTACAACGATGTTGGACCTGCCGAGGCGCCTGCCTAACTTCCTCCA
GGCAAAGCGAACAGCCTTAGCTTTCAGTCCCAGCCGACTGGACGCCTAGGTGGTAACTAAACGT
CTCCTAGGCGACTCCATGATAGGCATGCATATGGTTATTGATTGCTTTTAATGACTTCAAATTT
TCACTTATTCGACATCTTTTCATTGCCCTCACTAAATTTTCTATTGGAGTAGAATTTTTTTCTC
AAATACTCTAGGGGTGAACGTAGAAGCCTGATTACATTTACTAATTTAAAGAGCAAGATGACTG
AACTTGCGAAGAAACAATTAGCTGATTACATTGCTTCACTTTTGTTTGTTTGAGGTGAATATGG
AGACTGGAGAGAATGGATTATGAGAAAAAACTCACTTTAGTGTTGAATACAATTGTTATTTCAT
AGGACTATCTGTATGCACAATGCTTGACTCTAGCATATGGCACAGGCCATTTTTTGCAGGGTAC
AATACTGTCACTAGCTCTGTGAGAGCTTGTGTGGCGATTCATTTACTTCATGCCTAGTGCTTTG
TTTTGGAGAAAATACATCTTTAGCCTTTGTGTTTCCTTCTCTTTTTAACATCACTGTATTACTA
TTACCAAACATTCTTCCTGCAGGGATGGATCAGAAGGCCTTTCTTTTGCCTTCCGCATTACTGA
TGCAGCAACCCCAGCGTCAAATGAAGGTATGCACTGACGACCAGTTGACCACCCTATTATGCAT
CATTTGAATGGAATCTTGTTTCTCATCAAGCTTTTGTTGGATGTGTCTGTTGGTAATATGTTGT
GACTAGTATGGATTTTTCTTCTGCTTGCTTTTGTTTTCCATTTTGACATGAGTCACGCATCTAG
GCTGATTGTTGTTTTTACTTTTTACTTGGTTTTGTGTACTTGCAATTAAATTTGTATTTATGCC
ATCTATGTTCAATTTCAATCTAACACAGGTCAAGGATGGCGAAGAAATTCCAATGTGCCTCAAG
AAGGGTATGGAACAGCAAGTGTCATACCTGACCAAGGAATTTTCCTAGCCGCGTCTGTTTACCG
TCCTGTTTTTGAGGTGACCTGTCTTGTAGTTGTCTGTTTTATATGTGTCTCACACTACCATTAT
TATGTTGTTCATGGGGATTTTTTTTGCAGTTTATGAATAAAATAGGGTTGATGTTGCCTCAGAA
GTACTCACAACTTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.0034921
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b