Detail information of BGIOSGA015140_circ_g.10


General Information
CircRNA Name BGIOSGA015140_circ_g.10
ID in PlantcircBase osi_circ_005450
Alias 4:18028575|18029898
Organism Oryza sativa ssp. indica
Position chr4: 18028575-18029898  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015140-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCAGCA
CCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCACtctggtcatagtatctgcatttgggttc
caattgttgaagtcacctactaatgctgcagactgcaataggatgaaaatgtcatttttaattc
ttaatgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTGGTCATAGTATCTGCATTTGGGTTCCAATTGTTGAAGTCACCTACTAATGCTGCAGACTGC
AATAGGATGAAAATGTCATTTTTAATTCTTAATGTGATGACTGTTTGAAAAGAAGTTCATCAAT
ATATCATTTGTGCTACTGGTATAATTCCAGTACACTGGATAGGGAGTAGTGACCACTGCCAAAT
CACGTACCTGTGCTCCAGGTGCCCATTCTCGGTAGGTAATGCCTTCAGCGCTGGAAAGGACGGA
ATAATGATATTGAGTTTGATCATTTGATATCCAAGTAGAATATTGTAGGAATTTCTGTAGTAAT
GCGACTTTAATTTTACCTGCGGGTGAATCCAAGCTTTTCGTAACCACGAGAAAATGCATCCAAG
CCACCTTCATGTTGGTCAATAGCTGCACGCATTCTCTTGTATTCACTGTATCTGTTCATACCAC
CACGCATACCAAAAAAGATATACTGAAGTTAACAGAGTAGGTTTCCCAACAAAAGCGCCAGATA
TCAGAAATTAATTTGCTGAGTTGACAGAGAAGTGAGGGGATTAAACTATGCAGACTACTTGCCA
CATCCTTTTTGGTATCTCTAGTGATCAGTGCCAATGATTTGTATTGCATTTGTGAGATATCACC
TCTATTTTCAAATATTATACCAACCTTAATCAAAATGAAAAAAAGTAAATAACTAACCGGTAGT
CAAGATGGTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCATCTCCTGG
TGGTGGGATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCACACCCTCA
GTCACATTTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCCACAACCT
TTATGCTTGCTTCTGCCACTGATGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTTTATTATC
ATCAGGTATCTACACAGAACATAGATGGATAGACTCTGCATGAGACACCCAAAAAGAAAAAAAG
GTACATTCTTTTGTGGCAAAGTTGCTAGTTGGAAGACCCAACTTGGTTTTCAGTAGCCCAACAG
CCAGCACAAGGTCACAATGCACAAAACACATGAAACCTGGCATTGCCACTACATCATTTCATCA
CACATTTGGTCAGTGAATGACAACAGCTCGAATTTTATTCCCGGCATTACCTGAGATTCTTCAG
GTTGCTCTTGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGG
CACCAGCACCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCAC
Conservation Information
Conserved circRNAs osa_circ_023751*
PMCS
Functional Information
Coding potential Y
Potential coding position 18029308-18029889(-)
18029493-18028622(+)
Potential amino acid sequence MLEGFRNHLDYRYSEYKRMRAAIDQHEGGLDAFSRGYEKLGFTRSAEGITYREWAPGAQSAALV
GDFNNWNPNADTMTRVAL*(-)
MESLPPPQKVLLYYHQVSEILQVALEFPRLVPQRTASRRSHRQAPAPSQEHPRSSQRHSGHSIC
IWVPIVEVTY*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021