Detail information of Os11g0202300_circ_ag.3


General Information
CircRNA Name Os11g0202300_circ_ag.3
ID in PlantcircBase osa_circ_008780
Alias Os11circ02512/Os_ciR2661
Organism Oryza sativa
Position chr11: 5170839-5175109  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0202300_circ_ag.1 Os11g0202300_circ_ag.2 Os11g0202450_circ_ag.1 Os11g0202600_circ_g.1 Os11g0202600_circ_g.2 Os11g0202600_circ_g.3 Os11g0202600_circ_g.4 Os11g0205500_circ_igg.1 Os11g0204600_circ_g.1 Os11g0204600_circ_g.2 Os11g0204600_circ_g.3 Os11g0204600_circ_g.4 Os11g0205500_circ_g.1
Support reads 29/5
Tissues leaf and panicle/root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTTAGCTTGGTAAA
TGTTGGGCACCATTTCAAATCCCTTTTCAAAATAAAcgatccacgttcacttatcagccccaac
gtcttagcttccgataaaccttccaaaagcacacaattgttgtccttgataccgtaacaagatt
cgcagttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 249
Transcript exons: 5170839-5171053,5175076-5175109
CGATCCACGTTCACTTATCAGCCCCAACGTCTTAGCTTCCGATAAACCTTCCAAAAGCACACAA
TTGTTGTCCTTGATACCGTAACAAGATTCGCAGTTCTCATGACCACAATCCCCAGAGTCAGACC
AAATGCAATAGTCTTTAGTCCAGTTGAGGACTCCAACAAATGCATCAACTAATGATGGCATCCT
CTCAAGCACTGGAGCCCTGTCATTTGGGCACCATTTCAAATCCCTTTTCAAAATAAA

Genomic sequence CGATCCACGTTCACTTATCAGCCCCAACGTCTTAGCTTCCGATAAACCTTCCAAAAGCACACAA
TTGTTGTCCTTGATACCGTAACAAGATTCGCAGTTCTCATGACCACAATCCCCAGAGTCAGACC
AAATGCAATAGTCTTTAGTCCAGTTGAGGACTCCAACAAATGCATCAACTAATGATGGCATCCT
CTCAAGCACTGGAGCCCTGTCATGGAAGCCATCCAGCTGCAGAGAAACAAGACTCGGGATAGCG
ATACGTACCCGAGATATCTCACTGAAATAGGAATTGGTTATGCTCAAACGTTTTGCAGAGCTAG
ATGAGATCTTGGCACAGCCAAATTTACATGACTGAAACACTAGATGTTCCAATGCTGGACAGCT
CGAGAAGTTAAGGAAGCTGTCGTTTACCCTTATATTTCGAAGCTGTAGCCTCGTCAAGTGCTGG
GAGACAAGTGGCATCTCATCTATCACAAATGAGTGGTAGTATCCGACGTCGAGCCAGAGGAACC
GAGCCTTGTGGATAAGAGCATGCCTGAACCATAGGTTCACCCGAGCTGTGTCCTCGATGTCCAT
GTCGCCGTAATAATCGAACATTAGCACGCACGTGTCGAGAGGGGCTCCATCACGGAGTAGCAGC
AGACGGTCGAGAAACTCCTTCTGTTTCTTCACGCTTCCCAGATAGTCGCAGTCCTCGCCAATGC
GCAGCCCCGTGGCGGACTTCCAGAGGTGGAGCCATCGCCGAGCCAGCAGGCACGTCCGGACAGC
CTCCTGCGCCGGTAGGAAGGAGAGCACGTGGTGGAGCACCTCATCCGGGAGGTCCCCTATGCGG
TCTCCCCCGGTCGAGCCAGGCGATTCCTTGGGCATCTTCCGCGGAGACATTCCGTCGAACAGGT
TGCGGGCGTCGCCGCGGCGCCACCCCTCCCCTCCCAGCGTAGCAAGAACAGCTCAGGTAACAGT
AACACCAGGAGCGAGGGCTGTAAGGGTCAGGACCAAGCTGCCCACATCGCCACCGGCAGCCTCC
CCCCGGCCACCGGACACCGACCAGAGAGTGGAACGCGCGGCGCCCGCGTTGCAAGGATACGGAT
ACGCCAATGGCGCGGCGCGACGCTGGAGAGGAGAAGCGCGACACGAGCGCGGGAAGCGGACGGA
GAGCTCTGGATCGGAGGGGAGGAAAGGGTGGGATGCTGTGCTGGGTGGAGAAGACGGAGAGTTT
GTAGTCAGTTTCTATCTCTACTGAGGTGAGTCATGACTGGGGAGAGCCTGGGAGTCAGTTTGCT
GTGCATATAGTTTTATTTTATTTTTTTGTTACTAGCATGAAAATAAAGTTAGGACGCGGGAAAA
AATATTACCGCATTATTAATTGAGTTTTCATTATTATAAACTTACAAATAAATTTATCTAATAT
TTTTAAGCAACTTATATAAAATAATTATTTCATATCAAGCTTATAGCCTTAGGTTGCGTTCGGT
AGTCCAATGCTGCCCTCCAGCACAGAAAACGGAGTGGTCCATTAGCGCGTGATTAATTAAGTAT
TAGCTAATTTTTTTCAAAAAGAATCAATATGATTTTTTAAACAACTTTCGTACAGAAACTTTTT
TTAAAAAAAGCGCACCGTTTAACAGTTTCAAAAGCGTACGCACGGAAATTGAGACAGGAGAGTT
CCGAACCTGGACTAACGAACGCAGCTTAATAAGCCAAAATAAGTTATTGGGAAATAAAAATTAG
TTTCTAGATAAAACTTTTATATATTGGTTCATAGCGATTTAAAGGGCAATGCTAAAAAGAAATT
ACGTTGAAATATCTTAAAATCAAGTTAAAAATTTAAATTTTGGCTTTTGCTTTTACTTATTAGG
CTAATTGATGGGGCTCTCAGTTTAGAGCTCATTTAAAATATATTTCCTCTGTCCCTATATAAAT
GCACTCTAATACAGGATGTGACATATCATACTACTACGAATCTGAATATAACAGATAAAAATAA
ATTACAAGACAGATGATTACAAAATAAAAAAATATAAGAATAATCGTTTAGCAGGATAAGATAC
AAGATGGATGAGAGATAGACTTAAACTAAAATTCCAAAAACGTTAGAGCTCTTGGTAACTTTCC
TCCAAAGTCTTTATATGATTGTACATTTCATAGAATTTCAAAGTCTTCATAAATAAAACAAATT
GATTTAACCATTTGTTTTAAAGGTCATTTCAGAATTTTTTCTACAGAATTAAAATCCTTAAACT
TTTTATGTTTTTCCTATGAATTAAAAAACCCTCGGAAGCAGGGGCGGATCTACCCATTAAGCAG
GGTAGGTCGACTGTCCCAGCTACGACTCGTGTTGCCCCACACCCTCAAACCCCCCCTAACCCCT
TATAATAGTTGTGGACCATCAAAATTAGGTATAAGAAGGTGTAAGCACTCAATAGATGTTCGTT
TCTTCACAACATACGCACGCCGCAAACAATGATTGAGACAGTTATATGCGATTGAACTATAAAT
ACGATATGTGTTGTGTTTAATTGCTCTTATCGAGTGAACATCTCTTTTCTCCGCCCCATCTATA
TTTTGAAGTTGCGTCCACCACTGCTCGGAAGCCCAGGTAGTGAGCACATGGAAGCTTAACCTTC
TTAATAAATCAAAACAGTGGTGCATCAACCATTTTTCTCTTCCTCTTCCTCTTACTCTTCATCT
TCATCTTCATCTTCGTCTTCGTCTTCATCGTCATCGTCTTCGTCTTCGTCTTCATTGTCTTCGT
CTTCATGTTCGCCTTTGTAAGAGTCTTCATTTTCGTCTTCAAAAGGGTTTTCATAAGAGTCCTC
GTCTTCATCCTCATCTTCCTCCTCTTCATCCTGGTCATTTTCATCTTCTTCCAAAATCTCGATT
TCCTCAAAACTAAAAACTGCACAAAAACAAATAAGAAGAGCACAGTAAGTTTCAAGAGGTCTCA
CCTGAAACTTCACTTCAAAACAAAAACTTCAAATCCATTGACAAACTTAGTCCATTGGACCAAT
CCTTCAAAATCCAAATGGACATAAAGACTTCATTACTTCTTCATGACTAAAATCTGATTGTATC
CACTACATTTAAAGAAAAGAAACAAAATAAAATGCCCTCACTTGAACAAGCATTGGTCCTTTAC
AACATGGTTGCATCCTATAATGCATAGTAGTTGGATTCTCTACAACCTAGCACACGGCAAGAGA
GAAAATTGCATGGTCTAGGGACTATGTGAGTACCCATGGCAATTTGTAAACAAGATTTTTGGAC
ACCAGGCTATAATCACCAGGCGTTGTGAGCTCAACATAACAAATATAATCTAGTGTGACAAAAA
AAAATTACCTTAGCCAAACAACACAACTAAGCAATCTTGCCCAATTATTAATTACTAGCTGCTA
TGATACAACCTGGATGACTAGTGCAGCAAACTTGCATACAGCACCTCTGGTAATGGTAAACTGA
TTATCATAGCAGAACAAAGTCTGTGAGGTACTTGCATACATGGCAAATGGCATGCGAGCTATAA
GAGCAACTAATAAACTGGAATTCAAGATGGCAACTGATGGGAAAGAAAATCAAATAAAATTATT
GAAAGATATAATTACACACATACTGGCATACATGTTATCATACCGGTTACGCGATGCAAGAAAA
TTTTAGAAATCAGAATGGTTTTTTCGAATACTACTAGCCAAAAGAGTAGAATAGATAACGTCTT
CCCAATTGTACCAAATGGAGTGCATGCTTTCATTTCTCAATTAATCCATGTTCCTAGCATCAAT
TTCCAAAGAACTTCAATACAGCTTGCTATATTTCATGCATATGAAGGTAAAGGAAAATTTTAGA
AATATACAAAGAATGAAGAATGTTTACGTATGTTAAAAGTAGACAGAAACTTCAAAACTTTGAG
TACTCTCTTATCAACCGTTTTGCATTTGATTTCAACTATCTCAAGGTGTGCTGATATTACAAGT
GATCTATCCATTGAATGGCAGTTTCCTTTGATTTTCATTCTATGTTTAGGTCCCTGTCAGAAAT
TAAACATTTTAAGGTCAATAGAAAAACGCCCCCAAAACTTCAACAAGTAATCAATTGGCCAATT
AGAGAAGGTATACCTTGGAATAGATCTGAAGAATGAGATTCCCCAGAACCGGTGCATGTTGAAG
AATGCAACTTAGTGCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTT
AGCTTGGTAAATGTTGGGCACCATTTCAAATCCCTTTTCAAAATAAA
Conservation Information
Conserved circRNAs osi_circ_009009 osi_circ_009011 osi_circ_009013
PMCS 0.952366511
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR816
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015